RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 CCNA2P20248 432 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 NFATC3Q12968 1075 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 SPCS2Q15005 226 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 LLGL2Q6P1M3 1020 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 TTC33Q6PID6 262 aaPredicted RBP11.05□□□□□ -0.64
USP3-206ENST00000558157 CPSF7Q8N684 471 aaKnown RBP11.05□□□□□ -0.64
USP3-206ENST00000558157 SLC15A4Q8N697 577 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 ACDQ96AP0 544 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 MFSD14AQ96MC6 490 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 FZD8Q9H461 694 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 EHD1Q9H4M9 534 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 ANLNQ9NQW6 1124 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 STYXL1Q9Y6J8 313 aa11.05□□□□□ -0.64
USP3-206ENST00000558157 C3orf70A6NLC5 250 aaPredicted RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 APOC4-APOC2K7ER74 178 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 TNFRSF10AO00220 468 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 TRIM38O00635 465 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 AIM2O14862 343 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 RGS13O14921 159 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 LYPLA1O75608 230 aaPredicted RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 APOC2P02655 101 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 ERBB2P04626 1255 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 P4HA1P13674 534 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 PTPN1P18031 435 aaKnown RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 PIK3R1P27986 724 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 PSMC1P62191 440 aaKnown RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 MS4A2Q01362 244 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 RHDQ02161 417 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 POU5F1BQ06416 359 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 TRAP1Q12931 704 aaKnown RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 BNIP3Q12983 259 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 ITGADQ13349 1161 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 CEACAM7Q14002 265 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 ZNF846Q147U1 533 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 KIZQ2M2Z5 673 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 SMUG1Q53HV7 270 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 FAM47CQ5HY64 1035 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 FGD3Q5JSP0 725 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 LHX8Q68G74 356 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 ZPBP2Q6X784 338 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 RNF180Q86T96 592 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 IFNLR1Q8IU57 520 aaPredicted RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 MMAAQ8IVH4 418 aaKnown RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 GPD1LQ8N335 351 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 TTC30BQ8N4P2 665 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 ANKFN1Q8N957 763 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 FAM47BQ8NA70 645 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 GRIN3AQ8TCU5 1115 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 DNAJB3Q8WWF6 145 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 CFAP36Q96G28 342 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 KLHL32Q96NJ5 620 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 ACO2Q99798 780 aaKnown RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 OSBPL10Q9BXB5 764 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 SLC4A5Q9BY07 1137 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 CDH19Q9H159 772 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 POPDC2Q9HBU9 364 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 PNPOQ9NVS9 261 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 ANKMY1Q9P2S6 941 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 GTF2IRD1Q9UHL9 959 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 DAPK2Q9UIK4 370 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 PCDHB12Q9Y5F1 795 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 CXorf49A8MYA2 514 aaPredicted RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 ACKR2O00590 384 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 AREL1O15033 823 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 SLC22A1O15245 554 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 AKAP10O43572 662 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 BCL10O95999 233 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 MMP8P22894 467 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 MAGEA6P43360 314 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 TRPC1P48995 793 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 YWHAZP63104 245 aaKnown RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 TUBA3CQ13748 450 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 PCLAFQ15004 111 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 AMHR2Q16671 573 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 GDF6Q6KF10 455 aaPredicted RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 FAM117BQ6P1L5 589 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 NEK10Q6ZWH5 1172 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 IGFN1Q86VF2 1251 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 CNTD1Q8N815 330 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 PCSK9Q8NBP7 692 aaKnown RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 RNF169Q8NCN4 708 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 TANKQ92844 425 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 FBXL18Q96ME1 805 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 FAM213AQ9BRX8 229 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 MSTO1Q9BUK6 570 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 WDR12Q9GZL7 423 aaKnown RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.04□□□□□ -0.641e-6■■■■■ 28.5
USP3-206ENST00000558157 ADAMTS10Q9H324 1103 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 EFCAB1Q9HAE3 211 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 CD320Q9NPF0 282 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 MRGBPQ9NV56 204 aa11.04□□□□□ -0.64
USP3-206ENST00000558157 PRMT7Q9NVM4 692 aaPredicted RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 AGO2Q9UKV8 859 aaKnown RBP11.04□□□□□ -0.64
USP3-206ENST00000558157 GOLGA8QA0A0J9YX86 632 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 GOLGA8OA6NCC3 632 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 CENPBD1B2RD01 187 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 GOLGA8NF8WBI6 632 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 CST8O60676 142 aa11.03□□□□□ -0.64
USP3-206ENST00000558157 H2AFYO75367 372 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms