RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 AP4S1Q9Y587 144 aa16.52■□□□□ 0.23
SHMT2-232ENST00000557487 LGALS2P05162 132 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 ATP6V1B1P15313 513 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 USP46P62068 366 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 RHDQ02161 417 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 KCTD2Q14681 263 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 PPP2R5DQ14738 602 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 GRM3Q14832 879 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 MGAT5BQ3V5L5 792 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 FBXO47Q5MNV8 452 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 C6orf52Q5T4I8 152 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 OTUD1Q5VV17 481 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-232ENST00000557487 LRRC8EQ6NSJ5 796 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 IYDQ6PHW0 289 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 CCDC117Q8IWD4 279 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-232ENST00000557487 CNTN4Q8IWV2 1026 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 FBXO16Q8IX29 292 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-232ENST00000557487 TSPAN14Q8NG11 270 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 AGR3Q8TD06 166 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 MFSD3Q96ES6 412 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 KLHL32Q96NJ5 620 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 BIRC8Q96P09 236 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 HNRNPABQ99729 332 aaKnown RBP16.51■□□□□ 0.23
SHMT2-232ENST00000557487 CEP41Q9BYV8 373 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 IRAK4Q9NWZ3 460 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 NCKIPSDQ9NZQ3 722 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 RSL24D1Q9UHA3 163 aaKnown RBP16.51■□□□□ 0.23
SHMT2-232ENST00000557487 IPO11Q9UI26 975 aaKnown RBP16.51■□□□□ 0.23
SHMT2-232ENST00000557487 RUVBL2Q9Y230 463 aaKnown RBP16.51■□□□□ 0.23
SHMT2-232ENST00000557487 CEPT1Q9Y6K0 416 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 ASB14A6NK59 587 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 TK2O00142 265 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 KCNK1O00180 336 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 XPOTO43592 962 aaKnown RBP16.51■□□□□ 0.23
SHMT2-232ENST00000557487 H6PDO95479 791 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 VTNP04004 478 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 SBK3P0C264 359 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 FAM163BP0C2L3 166 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 CDH2P19022 906 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-232ENST00000557487 GMPRP36959 345 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 ALDH3B2P48448 385 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 CDK9P50750 372 aaKnown RBP16.51■□□□□ 0.23
SHMT2-232ENST00000557487 PSME3P61289 254 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 CDKL1Q00532 357 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 CDC42EP1Q00587 391 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 SQLEQ14534 574 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 HACD2Q6Y1H2 254 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 CHSY3Q70JA7 882 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 LIMS2Q7Z4I7 341 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 LSMEM2Q8N112 164 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 NUP93Q8N1F7 819 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 KDM1BQ8NB78 822 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 DIS3LQ8TF46 1054 aaKnown RBP16.51■□□□□ 0.23
SHMT2-232ENST00000557487 CCDC126Q96EE4 140 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 SLC10A4Q96EP9 437 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 PPP1R2P1Q96PQ5 205 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 DUSP16Q9BY84 665 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 PNPLA3Q9NST1 481 aa16.51■□□□□ 0.23
SHMT2-232ENST00000557487 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-232ENST00000557487 TRIP11Q15643 1979 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 EVPLQ92817 2033 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 A0A087X1B8 175 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 M0QYT0 321 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 PPEF2O14830 753 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 RNASEH2AO75792 299 aaKnown RBP16.5■□□□□ 0.23
SHMT2-232ENST00000557487 SLC35E2BP0CK96 405 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 ERCC2P18074 760 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 SLC7A1P30825 629 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 ADRA1BP35368 520 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 DPP6P42658 865 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 TKTL1P51854 596 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 GALNT2Q10471 571 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 SEMA3BQ13214 749 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 SLC27A1Q6PCB7 646 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 ARMCX2Q7L311 632 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 PIGZQ86VD9 579 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 CARM1Q86X55 608 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 CROCCP3Q8IVE0 287 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 REM2Q8IYK8 340 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-232ENST00000557487 PELI3Q8N2H9 469 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 FSTL5Q8N475 847 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-232ENST00000557487 GALNT4Q8N4A0 578 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 SLC2A14Q8TDB8 520 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 PTCD2Q8WV60 388 aaKnown RBP16.5■□□□□ 0.23
SHMT2-232ENST00000557487 COPS5Q92905 334 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 USP13Q92995 863 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-232ENST00000557487 MRPL57Q9BQC6 102 aaKnown RBP16.5■□□□□ 0.23
SHMT2-232ENST00000557487 MLPHQ9BV36 600 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-232ENST00000557487 MRPL46Q9H2W6 279 aaKnown RBP16.5■□□□□ 0.23
SHMT2-232ENST00000557487 PREBQ9HCU5 417 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 TUBA8Q9NY65 449 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-232ENST00000557487 RRN3Q9NYV6 651 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 PACSIN3Q9UKS6 424 aa16.5■□□□□ 0.23
SHMT2-232ENST00000557487 ARHGEF37A1IGU5 675 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 C9IYK1 514 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 PIRO00625 290 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 ZBTB24O43167 697 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-232ENST00000557487 AOC2O75106 756 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 CNMDO75829 334 aa16.49■□□□□ 0.23
SHMT2-232ENST00000557487 STAMBPO95630 424 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms