RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 A0A1W2PR77 199 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 SUV39H1O43463 412 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 MED7O43513 233 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 MTA2O94776 668 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 CYP11B1P15538 503 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 ACP1P24666 158 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 BPIFB4P59827 614 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 RPS14P62263 151 aaKnown RBP12.85□□□□□ -0.35
SHMT2-230ENST00000557427 GABREP78334 506 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 FMO1Q01740 532 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 PROX2Q3B8N5 592 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 C6orf132Q5T0Z8 1188 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 KIAA0895LQ68EN5 471 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 ZNF574Q6ZN55 896 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-230ENST00000557427 PEX26Q7Z412 305 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 ZNF677Q86XU0 584 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 ZNF366Q8N895 744 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 SPATA4Q8NEY3 305 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 SLC35G2Q8TBE7 412 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 DPH1Q9BZG8 443 aa12.85□□□□□ -0.35
SHMT2-230ENST00000557427 OLA1Q9NTK5 396 aaKnown RBP12.85□□□□□ -0.35
SHMT2-230ENST00000557427 SEPT11Q9NVA2 429 aaKnown RBP12.85□□□□□ -0.35
SHMT2-230ENST00000557427 HEMK1Q9Y5R4 338 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-230ENST00000557427 A0A1W2PNU3 283 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-230ENST00000557427 TMCO5BA8MYB1 307 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 C10orf142B7Z368 130 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 MSI1O43347 362 aaKnown RBP12.84□□□□□ -0.35
SHMT2-230ENST00000557427 FTLP02792 175 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-230ENST00000557427 ITGB6P18564 788 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 CXCR5P32302 372 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 CHKAP35790 457 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 HARS2P49590 506 aaKnown RBP12.84□□□□□ -0.35
SHMT2-230ENST00000557427 ERVPABLB-1P60509 514 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 SKOR1P84550 965 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 C2orf54Q08AI8 447 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 LONRF2Q1L5Z9 754 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 GLE1Q53GS7 698 aaKnown RBP12.84□□□□□ -0.35
SHMT2-230ENST00000557427 CDCP2Q5VXM1 449 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 SERPINA13PQ6UXR4 307 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 NT5DC3Q86UY8 548 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 SLC47A2Q86VL8 602 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 DNAAF5Q86Y56 855 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 DDI1Q8WTU0 396 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 UCMAQ8WVF2 138 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 IRGQQ8WZA9 623 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 PLD4Q96BZ4 506 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 VCPIP1Q96JH7 1222 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 PCDHB18PQ96TA0 734 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 SELENOOQ9BVL4 669 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 THAP2Q9H0W7 228 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 TMEM245Q9H330 911 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 STARD5Q9NSY2 213 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 TAS2R14Q9NYV8 317 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 CYTH4Q9UIA0 394 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 AMFRQ9UKV5 643 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 LRRK2Q5S007 2527 aa12.84□□□□□ -0.35
SHMT2-230ENST00000557427 EFSO43281 561 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 FBXO21O94952 628 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 LTFP02788 710 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 MYF5P13349 255 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 ACADSBP45954 432 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 RXRGP48443 463 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 LSSP48449 732 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 VSNL1P62760 191 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 UBAP2LQ14157 1087 aaKnown RBP12.83□□□□□ -0.36
SHMT2-230ENST00000557427 TRIP4Q15650 581 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-230ENST00000557427 BEND6Q5SZJ8 279 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-230ENST00000557427 C11orf63Q6NUN7 778 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 ATG14Q6ZNE5 492 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 ANKS1BQ7Z6G8 1248 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 DAAM2Q86T65 1068 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 PASD1Q8IV76 773 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 LSMEM2Q8N112 164 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 SCML4Q8N228 414 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 WDTC1Q8N5D0 677 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 ACTRT1Q8TDG2 376 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 FAM149B1Q96BN6 582 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 ARHGEF26Q96DR7 871 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 HES6Q96HZ4 224 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 SLC4A5Q9BY07 1137 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 CIPCQ9C0C6 399 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 SGK2Q9HBY8 427 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 SERGEFQ9UGK8 458 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 NAALADL1Q9UQQ1 740 aa12.83□□□□□ -0.36
SHMT2-230ENST00000557427 HBS1LQ9Y450 684 aaKnown RBP12.83□□□□□ -0.36
SHMT2-230ENST00000557427 GOLGA6L7A0A1B0GV03 622 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 FAM170AA1A519 330 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 TRIM38O00635 465 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 BUB1BO60566 1050 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-230ENST00000557427 USP12O75317 370 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 SEC31AO94979 1220 aaKnown RBP12.82□□□□□ -0.36
SHMT2-230ENST00000557427 CYBBP04839 570 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 FYNP06241 537 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 MMEP08473 750 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 CD38P28907 300 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 TBX4P57082 545 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 NXPH1P58417 271 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 E2F1Q01094 437 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 EIF4HQ15056 248 aaKnown RBP12.82□□□□□ -0.36
SHMT2-230ENST00000557427 CLEC16AQ2KHT3 1053 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms