RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 SLC14A2Q15849 920 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 DBN1Q16643 649 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 ARTNQ5T4W7 220 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 MARC1Q5VT66 337 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 RAP1GAP2Q684P5 730 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 CHST9Q7L1S5 443 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 TRIM42Q8IWZ5 723 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 BANPQ8N9N5 519 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 DRAXINQ8NBI3 349 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-229ENST00000557348 OR52K1Q8NGK4 314 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 MGARPQ8TDB4 240 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 ATP2A3Q93084 1043 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 CPNE1Q99829 537 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 TBL1YQ9BQ87 522 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 GORASP1Q9BQQ3 440 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 MLPHQ9BV36 600 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-229ENST00000557348 FSD1LQ9BXM9 530 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 PRKD2Q9BZL6 878 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 SLC25A51Q9H1U9 297 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 RBM22Q9NW64 420 aaKnown RBP eCLIP12.85□□□□□ -0.358e-10■■■■■ 40.7
SHMT2-229ENST00000557348 SYBUQ9NX95 663 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 MPP6Q9NZW5 540 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 PDP2Q9P2J9 529 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 SOX13Q9UN79 622 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 NR2E3Q9Y5X4 410 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 SLC4A7Q9Y6M7 1214 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 RPS6KL1Q9Y6S9 549 aa12.85□□□□□ -0.35
SHMT2-229ENST00000557348 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-229ENST00000557348 TRIM43BA6NCK2 446 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 TRIM49D1C9J1S8 452 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 LPXNO60711 386 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 SMIM24O75264 130 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 CLDN11O75508 207 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 TPBGLP0DKB5 382 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 CREB1P16220 341 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 PFKLP17858 780 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 RPL17P18621 184 aaKnown RBP12.84□□□□□ -0.35
SHMT2-229ENST00000557348 HADHAP40939 763 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 CCNFP41002 786 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 NIPAL4Q0D2K0 466 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 LAMB3Q13751 1172 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 KPNB1Q14974 876 aaKnown RBP12.84□□□□□ -0.35
SHMT2-229ENST00000557348 PDK4Q16654 411 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 CCDC149Q6ZUS6 474 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 RTL10Q7L3V2 364 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 PRPF39Q86UA1 669 aaKnown RBP12.84□□□□□ -0.35
SHMT2-229ENST00000557348 HERC6Q8IVU3 1022 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 C4orf33Q8N1A6 199 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 MPP5Q8N3R9 675 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 FIBCD1Q8N539 461 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 FITM2Q8N6M3 262 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 CNTD1Q8N815 330 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 RNF217Q8TC41 542 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 PSMG2Q969U7 264 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 TRIM43Q96BQ3 446 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-229ENST00000557348 CERS2Q96G23 380 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 VPS11Q9H270 941 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 MMADHCQ9H3L0 296 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-229ENST00000557348 PLAC1Q9HBJ0 212 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 SCOCQ9UIL1 159 aa12.84□□□□□ -0.35
SHMT2-229ENST00000557348 A0A1W2PPM1 405 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 COPEO14579 308 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 SEC24AO95486 1093 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 TBX18O95935 607 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 PAMP19021 973 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 OR1E1P30953 314 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 GP5P40197 560 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 CLCN2P51788 898 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 MXRA7P84157 204 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 SERINC3Q13530 473 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 MPP2Q14168 576 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 RFTN1Q14699 578 aaPredicted RBP12.83□□□□□ -0.35
SHMT2-229ENST00000557348 PCID2Q5JVF3 399 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 STXBP5Q5T5C0 1151 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 GRTP1Q5TC63 336 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 PDPK2PQ6A1A2 396 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 PSRC1Q6PGN9 363 aaPredicted RBP12.83□□□□□ -0.35
SHMT2-229ENST00000557348 TFAP2DQ7Z6R9 452 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 SETD3Q86TU7 594 aaPredicted RBP12.83□□□□□ -0.35
SHMT2-229ENST00000557348 RASSF3Q86WH2 238 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 TEX26Q8N6G2 289 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 NETO2Q8NC67 525 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 PPHLN1Q8NEY8 458 aaKnown RBP12.83□□□□□ -0.35
SHMT2-229ENST00000557348 LRRC8CQ8TDW0 803 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 LZICQ8WZA0 190 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 LRRC37BQ96QE4 947 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 KIFC1Q9BW19 673 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 NOL6Q9H6R4 1146 aaKnown RBP12.83□□□□□ -0.35
SHMT2-229ENST00000557348 ARNT2Q9HBZ2 717 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 FGFR1OP2Q9NVK5 253 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 INSL6Q9Y581 213 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 INSL5Q9Y5Q6 135 aa12.83□□□□□ -0.35
SHMT2-229ENST00000557348 TYW5A2RUC4 315 aaKnown RBP12.83□□□□□ -0.36
SHMT2-229ENST00000557348 F5H423 210 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-229ENST00000557348 COCHO43405 550 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 SPAG7O75391 227 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 FGBP02675 491 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 HLA-DQB2P05538 268 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 HMBSP08397 361 aa12.83□□□□□ -0.36
SHMT2-229ENST00000557348 CTSAP10619 480 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms