RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 EPHX3Q9H6B9 360 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 PLAC1Q9HBJ0 212 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 GJD2Q9UKL4 321 aa4.88□□□□□ -1.63
SCFD1-221ENST00000556534 LRRFIP2Q9Y608 721 aaKnown RBP4.88□□□□□ -1.63
SCFD1-221ENST00000556534 RPS10-NUDT3A0A1W2PQS6 291 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 RRN3P2A6NIE6 340 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 RFX5P48382 616 aaPredicted RBP4.87□□□□□ -1.63
SCFD1-221ENST00000556534 HTR6P50406 440 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 PGGT1BP53609 377 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.87□□□□□ -1.63
SCFD1-221ENST00000556534 GPR18Q14330 331 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 DCAF12L2Q5VW00 463 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 C17orf99Q6UX52 265 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 Q6ZSV7 163 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 SMAP1Q8IYB5 467 aaPredicted RBP4.87□□□□□ -1.63
SCFD1-221ENST00000556534 RFWD2Q8NHY2 731 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 HSPH1Q92598 858 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 CNOT9Q92600 299 aaKnown RBP4.87□□□□□ -1.63
SCFD1-221ENST00000556534 ATOH1Q92858 354 aaPredicted RBP4.87□□□□□ -1.63
SCFD1-221ENST00000556534 ELP4Q96EB1 424 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 APOLD1Q96LR9 279 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 WACQ9BTA9 647 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 GPR63Q9BZJ6 419 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 MYH16Q9H6N6 1097 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 MRPL44Q9H9J2 332 aaKnown RBP4.87□□□□□ -1.63
SCFD1-221ENST00000556534 WDR6Q9NNW5 1121 aaKnown RBP4.87□□□□□ -1.63
SCFD1-221ENST00000556534 ENTPD7Q9NQZ7 604 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 NCKIPSDQ9NZQ3 722 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 CNPY2Q9Y2B0 182 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 INSL5Q9Y5Q6 135 aa4.87□□□□□ -1.63
SCFD1-221ENST00000556534 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.86□□□□□ -1.63
SCFD1-221ENST00000556534 BECN2A8MW95 431 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 FAM157AC9JC47 383 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 KCNAB3O43448 404 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 RGS14O43566 566 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 LDB2O43679 373 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 IL1AP01583 271 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 MMP3P08254 477 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 GNLYP22749 145 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 MAPK9P45984 424 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 ARSFP54793 590 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 ZP1P60852 638 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 NAA25Q14CX7 972 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 ZNF284Q2VY69 593 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 Q6ZTK2 550 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 MON1AQ86VX9 555 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 TMC8Q8IU68 726 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 TMTC1Q8IUR5 882 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 CADM3Q8N126 398 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 TMEM163Q8TC26 289 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 MAELQ96JY0 434 aaKnown RBP4.86□□□□□ -1.63
SCFD1-221ENST00000556534 CD180Q99467 661 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 EYA3Q99504 573 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 LHPPQ9H008 270 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 CATSPERBQ9H7T0 1116 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 ALKBH4Q9NXW9 302 aa4.86□□□□□ -1.63
SCFD1-221ENST00000556534 C17orf113A0A1B0GUU1 675 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 CBY3A6NI87 242 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 INSIG1O15503 277 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 SPRY3O43610 288 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 KIF1CO43896 1103 aaKnown RBP4.85□□□□□ -1.63
SCFD1-221ENST00000556534 CEP104O60308 925 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 CYP1A2P05177 515 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 ALPLP05186 524 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 CTPS1P17812 591 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 DCTDP32321 178 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 RFC1P35251 1148 aaPredicted RBP4.85□□□□□ -1.63
SCFD1-221ENST00000556534 PSMC2P35998 433 aaKnown RBP4.85□□□□□ -1.63
SCFD1-221ENST00000556534 GPR12P47775 334 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 CENPAP49450 140 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 CDH12P55289 794 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 NANOS2P60321 138 aaKnown RBP4.85□□□□□ -1.63
SCFD1-221ENST00000556534 VAMP2P63027 116 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 GPS2Q13227 327 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 ZNF667Q5HYK9 610 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 LVRNQ6Q4G3 990 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 DNAAF1Q8NEP3 725 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 TMEM170AQ8WVE7 144 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 RUFY2Q8WXA3 655 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 PPM1EQ8WY54 764 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 MVB12BQ9H7P6 319 aa4.85□□□□□ -1.63
SCFD1-221ENST00000556534 A0A096LPK6 155 aa4.84□□□□□ -1.63
SCFD1-221ENST00000556534 PABPN1LA6NDY0 278 aaKnown RBP4.84□□□□□ -1.63
SCFD1-221ENST00000556534 INAFM1C9JVW0 142 aa4.84□□□□□ -1.63
SCFD1-221ENST00000556534 MS4A18H0YCH9 400 aa4.84□□□□□ -1.63
SCFD1-221ENST00000556534 HOXC11O43248 304 aaPredicted RBP4.84□□□□□ -1.63
SCFD1-221ENST00000556534 HNRNPA1P09651 372 aaKnown RBP eCLIP4.84□□□□□ -1.63
SCFD1-221ENST00000556534 ENO3P13929 434 aaPredicted RBP4.84□□□□□ -1.63
SCFD1-221ENST00000556534 THPOP40225 353 aa4.84□□□□□ -1.63
SCFD1-221ENST00000556534 GPD2P43304 727 aa4.84□□□□□ -1.63
SCFD1-221ENST00000556534 THBS3P49746 956 aa4.84□□□□□ -1.63
SCFD1-221ENST00000556534 ENTPD1P49961 510 aa4.84□□□□□ -1.63
SCFD1-221ENST00000556534 ROR2Q01974 943 aaKnown RBP4.84□□□□□ -1.63
SCFD1-221ENST00000556534 TRPC3Q13507 836 aa4.84□□□□□ -1.63
SCFD1-221ENST00000556534 FHL1Q13642 323 aa4.84□□□□□ -1.63
SCFD1-221ENST00000556534 HNF4GQ14541 408 aa4.84□□□□□ -1.63
SCFD1-221ENST00000556534 LCE1AQ5T7P2 110 aa4.84□□□□□ -1.63
SCFD1-221ENST00000556534 FAM83HQ6ZRV2 1179 aaPredicted RBP4.84□□□□□ -1.63
SCFD1-221ENST00000556534 LRRC8DQ7L1W4 858 aa4.84□□□□□ -1.63
SCFD1-221ENST00000556534 ADGRG6Q86SQ4 1221 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms