RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 IFT22Q9H7X7 185 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 SAYSD1Q9NPB0 183 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 CACNG4Q9UBN1 327 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 GIMAP2Q9UG22 337 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 PNMA8BQ9ULN7 279 aaPredicted RBP5.18□□□□□ -1.58
TMEM260-210ENST00000556422 UBQLN1Q9UMX0 589 aaKnown RBP5.18□□□□□ -1.58
TMEM260-210ENST00000556422 NAALADL1Q9UQQ1 740 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 NOX1Q9Y5S8 564 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 TTC3P53804 2025 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 NUP205Q92621 2012 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 FRMPD3Q5JV73 1810 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 TMEM120BA0PK00 339 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 E7ESA3 106 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 AXIN1O15169 862 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 KMOO15229 486 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 ALOX15BO15296 676 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 CDH16O75309 829 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 S100A9P06702 114 aaKnown RBP5.18□□□□□ -1.58
TMEM260-210ENST00000556422 AXLP30530 894 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 CPT1AP50416 773 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 YARSP54577 528 aaKnown RBP5.18□□□□□ -1.58
TMEM260-210ENST00000556422 CDH6P55285 790 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 SSTP61278 116 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 CAP1Q01518 475 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 PLCB3Q01970 1234 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 MTM1Q13496 603 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 STILQ15468 1287 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 SNAP47Q5SQN1 464 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 C6orf132Q5T0Z8 1188 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 AGMOQ6ZNB7 445 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 CCDC13Q8IYE1 715 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 BEST2Q8NFU1 509 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 OR6B3Q8NGW1 331 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 FAM172AQ8WUF8 416 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 FAF2Q96CS3 445 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 CHMP6Q96FZ7 201 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 HS6ST2Q96MM7 605 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 RNF157Q96PX1 679 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 GAS2L1Q99501 681 aaPredicted RBP5.18□□□□□ -1.58
TMEM260-210ENST00000556422 SNRNP25Q9BV90 132 aaKnown RBP5.18□□□□□ -1.58
TMEM260-210ENST00000556422 RSAD1Q9HA92 442 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 USP29Q9HBJ7 922 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 THAP1Q9NVV9 213 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 GPATCH2LQ9NWQ4 482 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 MTMR10Q9NXD2 777 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 SCOCQ9UIL1 159 aa5.18□□□□□ -1.58
TMEM260-210ENST00000556422 FAM32AQ9Y421 112 aaKnown RBP5.18□□□□□ -1.58
TMEM260-210ENST00000556422 THSD7BQ9C0I4 1608 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 LOC105371267A0A1B0GV96 52 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 MAGEB16A2A368 324 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 A8MXQ7 604 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 TK2O00142 265 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 SSX5O60225 188 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 C7P10643 843 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 IL10P22301 178 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 MLLT3P42568 568 aaPredicted RBP5.17□□□□□ -1.58
TMEM260-210ENST00000556422 CRYBB1P53674 252 aaPredicted RBP5.17□□□□□ -1.58
TMEM260-210ENST00000556422 CARD18P57730 90 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 LILRA4P59901 499 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 PFKPQ01813 784 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 DSC3Q14574 896 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 LRRC14Q15048 493 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 SF3B4Q15427 424 aaKnown RBP eCLIP5.17□□□□□ -1.582e-6■■■■■ 30.8
TMEM260-210ENST00000556422 MAPRE2Q15555 327 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 FSCN1Q16658 493 aaKnown RBP5.17□□□□□ -1.58
TMEM260-210ENST00000556422 OTUD1Q5VV17 481 aaPredicted RBP5.17□□□□□ -1.58
TMEM260-210ENST00000556422 KIAA0319Q5VV43 1072 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 SLC9A4Q6AI14 798 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 ITPRIPL1Q6GPH6 555 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 METTL2BQ6P1Q9 378 aaKnown RBP5.17□□□□□ -1.58
TMEM260-210ENST00000556422 TMEM154Q6P9G4 183 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 PAQR9Q6ZVX9 377 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 YTHDF3Q7Z739 585 aaKnown RBP5.17□□□□□ -1.58
TMEM260-210ENST00000556422 RFX6Q8HWS3 928 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 SLC22A9Q8IVM8 553 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 ZBED8Q8IZ13 594 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 LSMEM2Q8N112 164 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 FAM71DQ8N9W8 422 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 ZNF527Q8NB42 609 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 TTC13Q8NBP0 860 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 PCDH19Q8TAB3 1148 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 CENPIQ92674 756 aaPredicted RBP5.17□□□□□ -1.58
TMEM260-210ENST00000556422 PPP1R10Q96QC0 940 aaKnown RBP5.17□□□□□ -1.58
TMEM260-210ENST00000556422 FRMD8P1Q9BZ68 369 aaPredicted RBP5.17□□□□□ -1.58
TMEM260-210ENST00000556422 KLHL4Q9C0H6 718 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 OCEL1Q9H607 264 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 ACTR5Q9H9F9 607 aaPredicted RBP5.17□□□□□ -1.58
TMEM260-210ENST00000556422 INTS9Q9NV88 658 aaKnown RBP5.17□□□□□ -1.58
TMEM260-210ENST00000556422 GID8Q9NWU2 228 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 HPF1Q9NWY4 346 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 AKAP7Q9P0M2 348 aaPredicted RBP5.17□□□□□ -1.58
TMEM260-210ENST00000556422 GTF2IRD1Q9UHL9 959 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 MED16Q9Y2X0 877 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 Q9Y3F1 56 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 SHROOM3Q8TF72 1996 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 SLC12A8A0AV02 714 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 RAB19A4D1S5 217 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 VSTM5A8MXK1 200 aa5.17□□□□□ -1.58
TMEM260-210ENST00000556422 FAM155AB1AL88 458 aaPredicted RBP5.17□□□□□ -1.58
TMEM260-210ENST00000556422 MEN1O00255 615 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms