RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 TMEM18Q96B42 140 aa4.24□□□□□ -1.73
SCFD1-210ENST00000553693 DDX23Q9BUQ8 820 aaKnown RBP4.24□□□□□ -1.73
SCFD1-210ENST00000553693 ZNF556Q9HAH1 456 aa4.24□□□□□ -1.73
SCFD1-210ENST00000553693 G6PC2Q9NQR9 355 aa4.24□□□□□ -1.73
SCFD1-210ENST00000553693 MYO15BQ96JP2 1530 aa4.24□□□□□ -1.73
SCFD1-210ENST00000553693 IGHV4-28A0A0C4DH34 117 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 FAM90A20PA6NIJ5 464 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 METTL18O95568 372 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 PPP1R3DO95685 299 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 KRT10P13645 584 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 ACP5P13686 325 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 C21orf33P30042 268 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-210ENST00000553693 AVPR2P30518 371 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 DPP6P42658 865 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 CLCN5P51795 746 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 POU3F1Q03052 451 aaPredicted RBP4.23□□□□□ -1.73
SCFD1-210ENST00000553693 COASYQ13057 564 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 ATG9BQ674R7 924 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 CCDC146Q8IYE0 955 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 CACNA2D3Q8IZS8 1091 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 GALNT15Q8N3T1 639 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 TCP11L2Q8N4U5 519 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 OR6Y1Q8NGX8 325 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 TMED6Q8WW62 240 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 DUX5Q96PT3 197 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 FIZ1Q96SL8 496 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 THAP1Q9NVV9 213 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 GRHL1Q9NZI5 618 aa4.23□□□□□ -1.73
SCFD1-210ENST00000553693 A0A096LPK6 155 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 LINC01553A4QN01 128 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 OR6C68A6NDL8 312 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 DDTLA6NHG4 134 aaPredicted RBP4.22□□□□□ -1.73
SCFD1-210ENST00000553693 E7EVH7 732 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 HBP1O60381 514 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 ZNF432O94892 652 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 ZBTB11O95625 1053 aaPredicted RBP4.22□□□□□ -1.73
SCFD1-210ENST00000553693 IGKV3-20P01619 116 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 TNNT1P13805 278 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 DAOP14920 347 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 PDLIM4P50479 330 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 ERVFC1-1P60608 527 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 GOLGA8FQ08AF8 430 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 SMAD1Q15797 465 aaKnown RBP4.22□□□□□ -1.73
SCFD1-210ENST00000553693 LRRC24Q50LG9 513 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 SYCP2LQ5T4T6 812 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 TBC1D9BQ66K14 1250 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 C1orf228Q6PIY5 440 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 SYT13Q7L8C5 426 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 RASGRP2Q7LDG7 609 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 ARMC9Q7Z3E5 817 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 TRIM74Q86UV6 250 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 TRIM73Q86UV7 250 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 RBFAQ8N0V3 343 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 TBC1D22AQ8WUA7 517 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 NCSTNQ92542 709 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 GOLGA1Q92805 767 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 LHPPQ9H008 270 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 TAF1DQ9H5J8 278 aaPredicted RBP4.22□□□□□ -1.73
SCFD1-210ENST00000553693 PLCB1Q9NQ66 1216 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 KCNG2Q9UJ96 466 aa4.22□□□□□ -1.73
SCFD1-210ENST00000553693 AGO1Q9UL18 857 aaKnown RBP4.22□□□□□ -1.73
SCFD1-210ENST00000553693 TCF20Q9UGU0 1960 aaKnown RBP4.22□□□□□ -1.73
SCFD1-210ENST00000553693 KDM4EB2RXH2 506 aaPredicted RBP4.21□□□□□ -1.74
SCFD1-210ENST00000553693 CKMT1AP12532 417 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 ARSAP15289 507 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 ZNF12P17014 697 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 CST5P28325 142 aaPredicted RBP4.21□□□□□ -1.74
SCFD1-210ENST00000553693 GJC1P36383 396 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 RBM5P52756 815 aaKnown RBP eCLIP4.21□□□□□ -1.74
SCFD1-210ENST00000553693 TUBA1BP68363 451 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 SLC39A14Q15043 492 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 BRD3Q15059 726 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 KIF19Q2TAC6 998 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.21□□□□□ -1.74
SCFD1-210ENST00000553693 NEK10Q6ZWH5 1172 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 KTI12Q96EK9 354 aaPredicted RBP4.21□□□□□ -1.74
SCFD1-210ENST00000553693 TXNDC15Q96J42 360 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 SLC25A33Q9BSK2 321 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 C1QTNF4Q9BXJ3 329 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 PLEKHA2Q9HB19 425 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 SAYSD1Q9NPB0 183 aa4.21□□□□□ -1.74
SCFD1-210ENST00000553693 LOC102724159A0A0B4J2E5 919 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 F5H423 210 aaPredicted RBP4.2□□□□□ -1.74
SCFD1-210ENST00000553693 CAMTA2O94983 1202 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 CBX6O95503 412 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 CSF1P09603 554 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 ITGB8P26012 769 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 MVDP53602 400 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 BYSLQ13895 437 aaKnown RBP4.2□□□□□ -1.74
SCFD1-210ENST00000553693 PWP2Q15269 919 aaKnown RBP4.2□□□□□ -1.74
SCFD1-210ENST00000553693 CCDC38Q502W7 563 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 DCAF6Q58WW2 860 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 NR4A3Q92570 626 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 RUBCNQ92622 972 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 ATOH1Q92858 354 aaPredicted RBP4.2□□□□□ -1.74
SCFD1-210ENST00000553693 IGSF21Q96ID5 467 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 SLITRK1Q96PX8 696 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 RETREG1Q9H6L5 497 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 SLC45A1Q9Y2W3 748 aa4.2□□□□□ -1.74
SCFD1-210ENST00000553693 IGLV5-52A0A0A0MRZ9 124 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms