RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 DDX50Q9BQ39 737 aaKnown RBP26.72■■□□□ 1.87
CCDC88C-205ENST00000553403 SLCO1B3Q9NPD5 702 aa26.72■■□□□ 1.87
CCDC88C-205ENST00000553403 ALDOAP04075 364 aaKnown RBP26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 CORO1AP31146 461 aaKnown RBP26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 ITKQ08881 620 aa26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 SF3A3Q12874 501 aaKnown RBP eCLIP26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 LBRQ14739 615 aaKnown RBP26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 HSP90AA5PQ58FG0 334 aa26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 RNF43Q68DV7 783 aa26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 RFWD3Q6PCD5 774 aa26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 KYAT3Q6YP21 454 aaKnown RBP26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 TRPM8Q7Z2W7 1104 aa26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 ITIH5Q86UX2 942 aa26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 AUTS2Q8WXX7 1259 aa26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 KLHL14Q9P2G3 628 aa26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 ZFP37Q9Y6Q3 630 aaPredicted RBP26.71■■□□□ 1.87
CCDC88C-205ENST00000553403 TPP1O14773 563 aa26.7■■□□□ 1.87
CCDC88C-205ENST00000553403 KLF11O14901 512 aa26.7■■□□□ 1.87
CCDC88C-205ENST00000553403 CLDN11O75508 207 aa26.7■■□□□ 1.87
CCDC88C-205ENST00000553403 PDE1BQ01064 536 aa26.7■■□□□ 1.87
CCDC88C-205ENST00000553403 CHST9Q7L1S5 443 aa26.7■■□□□ 1.87
CCDC88C-205ENST00000553403 CFAP52Q8N1V2 620 aa26.7■■□□□ 1.87
CCDC88C-205ENST00000553403 PRKD2Q9BZL6 878 aa26.7■■□□□ 1.87
CCDC88C-205ENST00000553403 RNF38Q9H0F5 515 aa26.7■■□□□ 1.87
CCDC88C-205ENST00000553403 ZBP1Q9H171 429 aa26.7■■□□□ 1.87
CCDC88C-205ENST00000553403 ACTR5Q9H9F9 607 aaPredicted RBP26.7■■□□□ 1.87
CCDC88C-205ENST00000553403 PDFQ9HBH1 243 aa26.7■■□□□ 1.87
CCDC88C-205ENST00000553403 H3BNC9 293 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 TEX28O15482 410 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 GLRA3O75311 464 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 LATS1O95835 1130 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 IL1BP01584 269 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 KLKB1P03952 638 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 MMP2P08253 660 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 MAGEA12P43365 314 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 GNA12Q03113 381 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 POU6F1Q14863 301 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 DBN1Q16643 649 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 INSCQ1MX18 579 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 ATP2A3Q93084 1043 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 RANBP9Q96S59 729 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 AGAP2Q99490 1192 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 GKN1Q9NS71 199 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 HAUS2Q9NVX0 235 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 DCDC2Q9UHG0 476 aa26.7■■□□□ 1.86
CCDC88C-205ENST00000553403 TIMM44O43615 452 aa26.69■■□□□ 1.86
CCDC88C-205ENST00000553403 CD86P42081 329 aa26.69■■□□□ 1.86
CCDC88C-205ENST00000553403 DSC2Q02487 901 aa26.69■■□□□ 1.86
CCDC88C-205ENST00000553403 ADGRF1Q5T601 910 aa26.69■■□□□ 1.86
CCDC88C-205ENST00000553403 OTOAQ7RTW8 1153 aa26.69■■□□□ 1.86
CCDC88C-205ENST00000553403 PGBD5Q8N414 524 aa26.69■■□□□ 1.86
CCDC88C-205ENST00000553403 CCDC63Q8NA47 563 aa26.69■■□□□ 1.86
CCDC88C-205ENST00000553403 ARRDC2Q8TBH0 407 aa26.69■■□□□ 1.86
CCDC88C-205ENST00000553403 PRICKLE1Q96MT3 831 aaPredicted RBP26.69■■□□□ 1.86
CCDC88C-205ENST00000553403 MCMBPQ9BTE3 642 aa26.69■■□□□ 1.86
CCDC88C-205ENST00000553403 IARS2Q9NSE4 1012 aaKnown RBP26.69■■□□□ 1.86
CCDC88C-205ENST00000553403 ASB3Q9Y575 518 aa26.69■■□□□ 1.86
CCDC88C-205ENST00000553403 C2orf78A6NCI8 922 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 BIRC5O15392 142 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 FGF18O76093 207 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 F11P03951 625 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 CTSAP10619 480 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 HADHAP40939 763 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 SERPINB8P50452 374 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 MAXP61244 160 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 PDE1CQ14123 709 aaPredicted RBP26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 PABPC1LQ4VXU2 614 aaKnown RBP26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 OTOP2Q7RTS6 562 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 TMEM150AQ86TG1 271 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 HERC6Q8IVU3 1022 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 CNTN4Q8IWV2 1026 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 ARMC2Q8NEN0 867 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 RAB3IL1Q8TBN0 382 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 ZNF778Q96MU6 729 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 STOML2Q9UJZ1 356 aa26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 AGO1Q9UL18 857 aaKnown RBP26.68■■□□□ 1.86
CCDC88C-205ENST00000553403 KIAA1671Q9BY89 1806 aa26.67■■□□□ 1.86
CCDC88C-205ENST00000553403 ILVBLA1L0T0 632 aa26.67■■□□□ 1.86
CCDC88C-205ENST00000553403 NEFHP12036 1026 aa26.67■■□□□ 1.86
CCDC88C-205ENST00000553403 PAMP19021 973 aa26.67■■□□□ 1.86
CCDC88C-205ENST00000553403 HTRA4P83105 476 aaPredicted RBP26.67■■□□□ 1.86
CCDC88C-205ENST00000553403 PCSK7Q16549 785 aa26.67■■□□□ 1.86
CCDC88C-205ENST00000553403 FYB2Q5VWT5 728 aa26.67■■□□□ 1.86
CCDC88C-205ENST00000553403 FIBCD1Q8N539 461 aa26.67■■□□□ 1.86
CCDC88C-205ENST00000553403 DCLK2Q8N568 766 aa26.67■■□□□ 1.86
CCDC88C-205ENST00000553403 PTPRN2Q92932 1015 aa26.67■■□□□ 1.86
CCDC88C-205ENST00000553403 POLR1EQ9GZS1 481 aaKnown RBP26.67■■□□□ 1.86
CCDC88C-205ENST00000553403 ALG13Q9NP73 1137 aaKnown RBP26.67■■□□□ 1.86
CCDC88C-205ENST00000553403 TREX1Q9NSU2 369 aa26.67■■□□□ 1.86
CCDC88C-205ENST00000553403 BGNP21810 368 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 HOXD9P28356 352 aaPredicted RBP26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 TYK2P29597 1187 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 RPS24P62847 133 aaKnown RBP26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 ZNF235Q14590 738 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 SMAD1Q15797 465 aaKnown RBP26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 KIAA0930Q6ICG6 404 aaPredicted RBP26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 SETD3Q86TU7 594 aaPredicted RBP26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 BBS5Q8N3I7 341 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 ZNF398Q8TD17 642 aa26.66■■□□□ 1.86
CCDC88C-205ENST00000553403 TSSK1BQ9BXA7 367 aa26.66■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms