RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ID4P47928 161 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 NPTX2P47972 431 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 SLC1A6P48664 564 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 PSMD7P51665 324 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 PLK1P53350 603 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 NAA20P61599 178 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 FMO1Q01740 532 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 GRIK3Q13003 919 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 CUL2Q13617 745 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 TSTA3Q13630 321 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 PTK2BQ14289 1009 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 PDK1Q15118 436 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 NFE2Q16621 373 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 C14orf80Q86SX3 495 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 ZNF227Q86WZ6 799 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 APLFQ8IW19 511 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 CATSPER1Q8NEC5 780 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 MCPH1Q8NEM0 835 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 PLEKHO2Q8TD55 490 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 LENG1Q96BZ8 264 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 VPS50Q96JG6 964 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 ZBTB45Q96K62 511 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 BRD8Q9H0E9 1235 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 PRO3102Q9H379 93 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 LRRC19Q9H756 370 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 PKD2L2Q9NZM6 624 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 IL1RAPL1Q9NZN1 696 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 WDR35Q9P2L0 1181 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 PCDHA10Q9Y5I2 948 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 ZNF536O15090 1300 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 TRBV23-1A0A0A0MS06 115 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 C15orf38-AP3S2A0A0A6YYH1 394 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 MYOCOSA0A1B0GUC4 107 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 PTGES3LE9PB15 166 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 NPTXRO95502 500 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 CPA3P15088 417 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 RPL5P46777 297 aaKnown RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 RAP1GAPP47736 663 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 AQP4P55087 323 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 CDH8P55286 799 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 LSM3P62310 102 aaKnown RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 SNAPC2Q13487 334 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 TAF5Q15542 800 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 SPDYAQ5MJ70 313 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 C6orf52Q5T4I8 152 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 SLFN12LQ6IEE8 588 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 PDZD4Q76G19 769 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 ARPINQ7Z6K5 226 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 PATL1Q86TB9 770 aaKnown RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 SIX6OS1Q8N1H7 587 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 LRRC71Q8N4P6 559 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 FAM156AQ8NDB6 213 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 ZNF606Q8WXB4 792 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 CASP10Q92851 521 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 ZNF333Q96JL9 665 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 DACH2Q96NX9 599 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 SEPHS2Q99611 448 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 MTMR12Q9C0I1 747 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 KATNBL1Q9H079 304 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 ILKAPQ9H0C8 392 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 TXNRD2Q9NNW7 524 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 CHST12Q9NRB3 414 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 GID8Q9NWU2 228 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 CCDC167Q9P0B6 97 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 RBPJLQ9UBG7 517 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 FBXO40Q9UH90 709 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 SUN2Q9UH99 717 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 ABT1Q9ULW3 272 aaKnown RBP5.57□□□□□ -1.52
LIMA1-203ENST00000547825 CDY2AQ9Y6F7 541 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 CDY1Q9Y6F8 540 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 COMMD3-BMI1R4GMX3 469 aa5.57□□□□□ -1.52
LIMA1-203ENST00000547825 DNAJC25-GNG10A0A024R161 153 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 C19orf81C9J6K1 198 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 NFIBO00712 420 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 TBX3O15119 743 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 KPNA6O60684 536 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 TNFAIP8O95379 198 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 ZNF23P17027 643 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 TPH1P17752 444 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 ADH6P28332 368 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 RPL22P35268 128 aaKnown RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 C21orf59P57076 290 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 CCDC15Q0P6D6 951 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 SPP2Q13103 211 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 BFSP2Q13515 415 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 AGKQ53H12 422 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 LDLRAP1Q5SW96 308 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 C16orf89Q6UX73 402 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 MICU2Q8IYU8 434 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 KYQ8NBH2 561 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 BHLHE22Q8NFJ8 381 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 LMO3Q8TAP4 145 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 RIN3Q8TB24 985 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 APOPT1Q96IL0 206 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 SPATA17Q96L03 361 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 CEP19Q96LK0 163 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 MAF1Q9H063 256 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 FAM49AQ9H0Q0 323 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-203ENST00000547825 RERGLQ9H628 205 aa5.56□□□□□ -1.52
LIMA1-203ENST00000547825 TCF7L2Q9NQB0 619 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms