RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 GLT6D1Q7Z4J2 308 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 NMRK1Q9NWW6 199 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 STX18Q9P2W9 335 aaKnown RBP15.87■□□□□ 0.13
CUX1-211ENST00000546411 A0A1W2PQH9 124 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 GLTPD2A6NH11 291 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 KIF1CO43896 1103 aaKnown RBP15.87■□□□□ 0.13
CUX1-211ENST00000546411 PLIN3O60664 434 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 ENPEPQ07075 957 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 BIRC2Q13490 618 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 SWT1Q5T5J6 900 aaKnown RBP15.87■□□□□ 0.13
CUX1-211ENST00000546411 TMEM110Q86TL2 294 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 SLC35F5Q8WV83 523 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 C10orf82Q8WW14 230 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 NXNL1Q96CM4 212 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 NRBF2Q96F24 287 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 HNRNPABQ99729 332 aaKnown RBP15.87■□□□□ 0.13
CUX1-211ENST00000546411 HAUS8Q9BT25 410 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 PIDD1Q9HB75 910 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 PDLIM7Q9NR12 457 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 DERAQ9Y315 318 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 COL1A2P08123 1366 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 C9IYK1 514 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 TCEA3O75764 348 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 PRKAR2AP13861 404 aaKnown RBP15.87■□□□□ 0.13
CUX1-211ENST00000546411 ZNF23P17027 643 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 PTPN3P26045 913 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 GJA9P57773 515 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 RAB10P61026 200 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 WASHC5Q12768 1159 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 CIR1Q86X95 450 aaPredicted RBP15.87■□□□□ 0.13
CUX1-211ENST00000546411 BHLHE22Q8NFJ8 381 aaPredicted RBP15.87■□□□□ 0.13
CUX1-211ENST00000546411 RNF217Q8TC41 542 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 SLC4A5Q9BY07 1137 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 CLPBQ9H078 707 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 LMCD1Q9NZU5 365 aa15.87■□□□□ 0.13
CUX1-211ENST00000546411 ARL5CA6NH57 179 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 MYO1GB0I1T2 1018 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 C9JVG2 144 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 INPP4BO15327 924 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 PEX11AO75192 247 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 GMPRP36959 345 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 DAOAP59103 153 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 DPYSL2Q16555 572 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 OTUD3Q5T2D3 398 aaPredicted RBP15.86■□□□□ 0.13
CUX1-211ENST00000546411 DDX53Q86TM3 631 aaKnown RBP15.86■□□□□ 0.13
CUX1-211ENST00000546411 DCBLD1Q8N8Z6 715 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 TRPC4APQ8TEL6 797 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 ERLEC1Q96DZ1 483 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 RIC8BQ9NVN3 520 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 AK5Q9Y6K8 562 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 KNL1Q8NG31 2342 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 SH3BGRLO75368 114 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 ANPEPP15144 967 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 SLC5A3P53794 718 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 RALGPS1Q5JS13 557 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 NPLOC4Q8TAT6 608 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 POLR1EQ9GZS1 481 aaKnown RBP15.86■□□□□ 0.13
CUX1-211ENST00000546411 GLOD4Q9HC38 313 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 BTRCQ9Y297 605 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 PTCH2Q9Y6C5 1203 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 BIRC5O15392 142 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 ARHGDIAP52565 204 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 ARHGEF7Q14155 803 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 ARL13AQ5H913 290 aaPredicted RBP15.86■□□□□ 0.13
CUX1-211ENST00000546411 LPCAT4Q643R3 524 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 CLEC20AQ6ZU45 233 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 PQLC3Q8N755 202 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 ZNF781Q8N8C0 355 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 PTGR2Q8N8N7 351 aaPredicted RBP15.86■□□□□ 0.13
CUX1-211ENST00000546411 JADE3Q92613 823 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 EPB41L4BQ9H329 900 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 SYTL2Q9HCH5 934 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 TAS2R13Q9NYV9 303 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 ZMYM5Q9UJ78 669 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 WASF2Q9Y6W5 498 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 MOXD2PA6NHM9 499 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 NRP1O14786 923 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 CLASP2O75122 1294 aaKnown RBP15.86■□□□□ 0.13
CUX1-211ENST00000546411 FKBP9O95302 570 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 CCL23P55773 120 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 TIGD5Q53EQ6 642 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 FKBP9P1Q75LS8 142 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 FAR2Q96K12 515 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 PKD2L2Q9NZM6 624 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 PDP2Q9P2J9 529 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 ZNF212Q9UDV6 495 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 TEX264Q9Y6I9 313 aa15.86■□□□□ 0.13
CUX1-211ENST00000546411 PSMD12O00232 456 aaPredicted RBP15.85■□□□□ 0.13
CUX1-211ENST00000546411 SIN3BO75182 1162 aa15.85■□□□□ 0.13
CUX1-211ENST00000546411 PGM3O95394 542 aa15.85■□□□□ 0.13
CUX1-211ENST00000546411 AP2A1O95782 977 aa15.85■□□□□ 0.13
CUX1-211ENST00000546411 CLPTM1O96005 669 aa15.85■□□□□ 0.13
CUX1-211ENST00000546411 PSMC3P17980 439 aa15.85■□□□□ 0.13
CUX1-211ENST00000546411 ZNF132P52740 706 aa15.85■□□□□ 0.13
CUX1-211ENST00000546411 PGGT1BP53609 377 aa15.85■□□□□ 0.13
CUX1-211ENST00000546411 DUSP4Q13115 394 aa15.85■□□□□ 0.13
CUX1-211ENST00000546411 TUSC3Q13454 348 aa15.85■□□□□ 0.13
CUX1-211ENST00000546411 NCBP2-AS2Q69YL0 99 aa15.85■□□□□ 0.13
CUX1-211ENST00000546411 TTC33Q6PID6 262 aaPredicted RBP15.85■□□□□ 0.13
CUX1-211ENST00000546411 ARHGEF3Q9NR81 526 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms