RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 CEP128Q6ZU80 1094 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 PID1Q7Z2X4 250 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 IFT20Q8IY31 132 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 ATP11CQ8NB49 1132 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 LRIG1Q96JA1 1093 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 GDAP1L1Q96MZ0 367 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 NELL2Q99435 816 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 LRRC1Q9BTT6 524 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 FOXP3Q9BZS1 431 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 PHACTR1Q9C0D0 580 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 FBRSQ9HAH7 460 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 GLOD4Q9HC38 313 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 SEPT10Q9P0V9 454 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 THAP10Q9P2Z0 257 aaPredicted RBP16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 SHOC2Q9UQ13 582 aa16.27■□□□□ 0.2
PRPF40A-212ENST00000545856 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 ALOX15BO15296 676 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 SRCP12931 536 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 CR2P20023 1033 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 TPSB2P20231 275 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 RPL22P35268 128 aaKnown RBP16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 ADCY8P40145 1251 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 SLC6A11P48066 632 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 GEMP55040 296 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 RHOAP61586 193 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 MRPS21P82921 87 aaKnown RBP16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 SARNPP82979 210 aaKnown RBP16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 RAD51Q06609 339 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 MPP3Q13368 585 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 ENPP2Q13822 863 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 MORF4L2Q15014 288 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 TPSAB1Q15661 275 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 SLC44A4Q53GD3 710 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 TEX35Q5T0J7 233 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 TMEM215Q68D42 235 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 C22orf39Q6P5X5 142 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 PPP1R21Q6ZMI0 780 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 ZNF852Q6ZMS4 543 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 GPR161Q8N6U8 529 aaKnown RBP16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 CNTD1Q8N815 330 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 SPOCK2Q92563 424 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 IMP4Q96G21 291 aaKnown RBP16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 MRGPRX3Q96LB0 322 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 NUDCD1Q96RS6 583 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 TUBGCP5Q96RT8 1024 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 CIPCQ9C0C6 399 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 SUN2Q9UH99 717 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 RSPH14Q9UHP6 348 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 DNALI1O14645 258 aaPredicted RBP16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 SEC31AO94979 1220 aaKnown RBP16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 HLA-DQB2P05538 268 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 SERPINF2P08697 491 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 GLDCP23378 1020 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 RECQLP46063 649 aaPredicted RBP16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 GALK1P51570 392 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 TERF1P54274 439 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 KDSRQ06136 332 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 GPS1Q13098 491 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 CBLBQ13191 982 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 PTPRNQ16849 979 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 DGKKQ5KSL6 1271 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 LINC00523Q86TU6 105 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 PPIL6Q8IXY8 311 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 MYRIPQ8NFW9 859 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 OR2AP1Q8NGE2 309 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 CCDC110Q8TBZ0 833 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 CPEB1Q9BZB8 566 aaKnown RBP16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 ARHGEF3Q9NR81 526 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 HEBP1Q9NRV9 189 aa16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 TPX2Q9ULW0 747 aaKnown RBP16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 FARP1Q9Y4F1 1045 aaPredicted RBP16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 ARIH1Q9Y4X5 557 aaPredicted RBP16.26■□□□□ 0.19
PRPF40A-212ENST00000545856 TCF20Q9UGU0 1960 aaKnown RBP16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 EDDM13A0A1B0GTR0 161 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 WASH3PC4AMC7 463 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 PRRT4C9JH25 899 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 ZBTB24O43167 697 aaPredicted RBP16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 SOCS5O75159 536 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 EPOP01588 193 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 TNNT3P45378 269 aaPredicted RBP16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 LRRC32Q14392 662 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 CYTH1Q15438 398 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 HNRNPA1L2Q32P51 320 aaKnown RBP16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 WDR93Q6P2C0 686 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 RNF135Q8IUD6 432 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 GJD3Q8N144 294 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 CCDC33Q8N5R6 958 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 NETO2Q8NC67 525 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 MCUQ8NE86 351 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 ST13P5Q8NFI4 369 aaPredicted RBP16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 FAM3CQ92520 227 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 TADA1Q96BN2 335 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 AGAP3Q96P47 875 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 OSBPL1AQ9BXW6 950 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 OSBPL6Q9BZF3 934 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 LRRC40Q9H9A6 602 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 NT5MQ9NPB1 228 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 GDF3Q9NR23 364 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 RAB6BQ9NRW1 208 aa16.25■□□□□ 0.19
PRPF40A-212ENST00000545856 LHX3Q9UBR4 397 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms