RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 PLXNB3Q9ULL4 1909 aa13.38□□□□□ -0.27
RTN3-213ENST00000543552 CELSR3Q9NYQ7 3312 aa13.38□□□□□ -0.27
RTN3-213ENST00000543552 TRABD2BA6NFA1 517 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 A6NNZ2 444 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 TAF4O00268 1085 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 AP1G1O43747 822 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 ADRB3P13945 408 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 JUPP14923 745 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 CKMT2P17540 419 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 CHRNB2P17787 502 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 CDK11BP21127 795 aaKnown RBP13.37□□□□□ -0.27
RTN3-213ENST00000543552 L1CAMP32004 1257 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 KLK7P49862 253 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 COPB1P53618 953 aaKnown RBP13.37□□□□□ -0.27
RTN3-213ENST00000543552 ARF5P84085 180 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 UBXN1Q04323 297 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 C15orf59Q2T9L4 293 aaPredicted RBP13.37□□□□□ -0.27
RTN3-213ENST00000543552 CCDC14Q49A88 953 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 TMEM259Q4ZIN3 620 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 EFHC2Q5JST6 749 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 MANEALQ5VSG8 457 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 PPP1R2P3Q6NXS1 205 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 C3orf20Q8ND61 904 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 SLC30A5Q8TAD4 765 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 FAM172AQ8WUF8 416 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 TSC1Q92574 1164 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 NTAN1Q96AB6 310 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 RAB7BQ96AH8 199 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 FEM1CQ96JP0 617 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 MYOCQ99972 504 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 CALN1Q9BXU9 219 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 OSBPL1AQ9BXW6 950 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 ZDHHC6Q9H6R6 413 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 SEPT11Q9NVA2 429 aaKnown RBP13.37□□□□□ -0.27
RTN3-213ENST00000543552 TMEM248Q9NWD8 314 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 HECAQ9UBI9 543 aaPredicted RBP13.37□□□□□ -0.27
RTN3-213ENST00000543552 LIMA1Q9UHB6 759 aaKnown RBP13.37□□□□□ -0.27
RTN3-213ENST00000543552 GPSM3Q9Y4H4 160 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 WASF2Q9Y6W5 498 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 APC2O95996 2303 aa13.37□□□□□ -0.27
RTN3-213ENST00000543552 GOLGA4Q13439 2230 aaKnown RBP13.36□□□□□ -0.27
RTN3-213ENST00000543552 FAM149AA5PLN7 773 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 NEMP1O14524 444 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 PLEKP08567 350 aaPredicted RBP13.36□□□□□ -0.27
RTN3-213ENST00000543552 UNGP13051 313 aaPredicted RBP13.36□□□□□ -0.27
RTN3-213ENST00000543552 GPD1P21695 349 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 AIF1P55008 147 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 SNRPD1P62314 119 aaKnown RBP13.36□□□□□ -0.27
RTN3-213ENST00000543552 C1QBPQ07021 282 aaKnown RBP13.36□□□□□ -0.27
RTN3-213ENST00000543552 BNIP3Q12983 259 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 DNAJC3Q13217 504 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 ZNF211Q13398 564 aaPredicted RBP13.36□□□□□ -0.27
RTN3-213ENST00000543552 CAMK2BQ13554 666 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 CLEC16AQ2KHT3 1053 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 DNAJC24Q6P3W2 148 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 KANSL1Q7Z3B3 1105 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 NLRP14Q86W24 1093 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 ZNF354CQ86Y25 554 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 PHF13Q86YI8 300 aaPredicted RBP13.36□□□□□ -0.27
RTN3-213ENST00000543552 RYBPQ8N488 228 aaPredicted RBP13.36□□□□□ -0.27
RTN3-213ENST00000543552 GPT2Q8TD30 523 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 CASKIN2Q8WXE0 1202 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 CENPIQ92674 756 aaPredicted RBP13.36□□□□□ -0.27
RTN3-213ENST00000543552 KLK6Q92876 244 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 NAT10Q9H0A0 1025 aaKnown RBP13.36□□□□□ -0.27
RTN3-213ENST00000543552 SCUBE2Q9NQ36 999 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 DONSONQ9NYP3 566 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 DNAI1Q9UI46 699 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 RAXQ9Y2V3 346 aa13.36□□□□□ -0.27
RTN3-213ENST00000543552 FCF1Q9Y324 198 aaKnown RBP13.36□□□□□ -0.27
RTN3-213ENST00000543552 CACNA1GO43497 2377 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 NEMP2A6NFY4 417 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 H3BM21 787 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 RIOK3O14730 519 aaKnown RBP13.35□□□□□ -0.27
RTN3-213ENST00000543552 EPHB6O15197 1021 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 TSPAN6O43657 245 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 SDC3O75056 442 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 ZNF821O75541 412 aaPredicted RBP13.35□□□□□ -0.27
RTN3-213ENST00000543552 LRIG2O94898 1065 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 MBD3O95983 291 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 GSRP00390 522 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 ACP1P24666 158 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 RFC1P35251 1148 aaPredicted RBP13.35□□□□□ -0.27
RTN3-213ENST00000543552 ACVRL1P37023 503 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 HDAC4P56524 1084 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 HNRNPKP61978 463 aaKnown RBP eCLIP13.35□□□□□ -0.27
RTN3-213ENST00000543552 DAB2P98082 770 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 E2F1Q01094 437 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 RAD51Q06609 339 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 CYP4F3Q08477 520 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 SGCGQ13326 291 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 MAPK8IP2Q13387 824 aaPredicted RBP13.35□□□□□ -0.27
RTN3-213ENST00000543552 ZNF805Q5CZA5 627 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 ARTNQ5T4W7 220 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 HES3Q5TGS1 186 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 SEL1L3Q68CR1 1132 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 KYAT3Q6YP21 454 aaKnown RBP13.35□□□□□ -0.27
RTN3-213ENST00000543552 PTAR1Q7Z6K3 402 aaPredicted RBP13.35□□□□□ -0.27
RTN3-213ENST00000543552 ABI3BPQ7Z7G0 1075 aa13.35□□□□□ -0.27
RTN3-213ENST00000543552 SLFN11Q7Z7L1 901 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms