RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 RPRD1AQ96P16 312 aaPredicted RBP16.56■□□□□ 0.24
COL4A1-204ENST00000543140 MIPEPQ99797 713 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 WWP1Q9H0M0 922 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 SP110Q9HB58 689 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 ENTPD7Q9NQZ7 604 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 LNPEPQ9UIQ6 1025 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 CDY1Q9Y6F8 540 aa16.56■□□□□ 0.24
COL4A1-204ENST00000543140 FAM92AA1XBS5 289 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 RTN3O95197 1032 aaPredicted RBP16.55■□□□□ 0.24
COL4A1-204ENST00000543140 SERPINE1P05121 402 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 MPOP05164 745 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 ARNTP27540 789 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 CD86P42081 329 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 CPA2P48052 419 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 RANBP10Q6VN20 620 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 PIWIL2Q8TC59 973 aaKnown RBP16.55■□□□□ 0.24
COL4A1-204ENST00000543140 ACSS2Q9NR19 701 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 PNPOQ9NVS9 261 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 CLIC5Q9NZA1 410 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 TCAF1Q9Y4C2 921 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 TRAFD1O14545 582 aaPredicted RBP16.55■□□□□ 0.24
COL4A1-204ENST00000543140 ADAM12O43184 909 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 UPP2O95045 317 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 ESRRAP11474 423 aaPredicted RBP16.55■□□□□ 0.24
COL4A1-204ENST00000543140 DNAJB2P25686 324 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 RENBPP51606 427 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 CCL23P55773 120 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 DSC2Q02487 901 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 USP10Q14694 798 aaKnown RBP16.55■□□□□ 0.24
COL4A1-204ENST00000543140 CCDC153Q494R4 210 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 MARC1Q5VT66 337 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 FAM13CQ8NE31 585 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 MOCOSQ96EN8 888 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 SORT1Q99523 831 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 TMEM248Q9NWD8 314 aa16.55■□□□□ 0.24
COL4A1-204ENST00000543140 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.54■□□□□ 0.24
COL4A1-204ENST00000543140 TLR5O60602 858 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 GLRBP48167 497 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 KCNQ1P51787 676 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 NDST2P52849 883 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 ATN1P54259 1190 aaPredicted RBP16.54■□□□□ 0.24
COL4A1-204ENST00000543140 HNRNPDQ14103 355 aaKnown RBP16.54■□□□□ 0.24
COL4A1-204ENST00000543140 ZNF460Q14592 562 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 IHHQ14623 411 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 RINLQ6ZS11 566 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 CLEC14AQ86T13 490 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 TREML1Q86YW5 311 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 NPAS4Q8IUM7 802 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 LRRC49Q8IUZ0 686 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 SLC41A1Q8IVJ1 513 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 WDR75Q8IWA0 830 aaKnown RBP16.54■□□□□ 0.24
COL4A1-204ENST00000543140 REM2Q8IYK8 340 aaPredicted RBP16.54■□□□□ 0.24
COL4A1-204ENST00000543140 SPPL2BQ8TCT7 592 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 ZNF296Q8WUU4 475 aaPredicted RBP16.54■□□□□ 0.24
COL4A1-204ENST00000543140 GPR22Q99680 433 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 OXCT2Q9BYC2 517 aaPredicted RBP16.54■□□□□ 0.24
COL4A1-204ENST00000543140 NMRAL1Q9HBL8 299 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 CCDC22O60826 627 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 GJB3O75712 270 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 ENO1P06733 434 aaKnown RBP16.54■□□□□ 0.24
COL4A1-204ENST00000543140 ARCN1P48444 511 aaKnown RBP16.54■□□□□ 0.24
COL4A1-204ENST00000543140 RCN2Q14257 317 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 POTEHQ6S545 545 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 NAPRTQ6XQN6 538 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 SPNS2Q8IVW8 549 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 CFAP52Q8N1V2 620 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 PNPLA1Q8N8W4 532 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 PPP4R1Q8TF05 950 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 TTPALQ9BTX7 342 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 CFHR5Q9BXR6 569 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 CADM1Q9BY67 442 aaKnown RBP16.54■□□□□ 0.24
COL4A1-204ENST00000543140 UNKQ9C0B0 810 aaKnown RBP16.54■□□□□ 0.24
COL4A1-204ENST00000543140 UNC93B1Q9H1C4 597 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 SLC25A51Q9H1U9 297 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 RHOJQ9H4E5 214 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 TLK1Q9UKI8 766 aa16.54■□□□□ 0.24
COL4A1-204ENST00000543140 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.54■□□□□ 0.24
COL4A1-204ENST00000543140 FNDC1Q4ZHG4 1894 aaPredicted RBP16.54■□□□□ 0.24
COL4A1-204ENST00000543140 G3V2L1 256 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 ATF6P18850 670 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 OR1E1P30953 314 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 DBN1Q16643 649 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 KDELC1Q6UW63 502 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 DEFB128Q7Z7B8 93 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 SPATA6LQ8N4H0 392 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 IMP4Q96G21 291 aaKnown RBP16.53■□□□□ 0.24
COL4A1-204ENST00000543140 BTBD10Q9BSF8 475 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 TASP1Q9H6P5 420 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 OLA1Q9NTK5 396 aaKnown RBP16.53■□□□□ 0.24
COL4A1-204ENST00000543140 IGLV3-10A0A075B6K4 115 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.53■□□□□ 0.24
COL4A1-204ENST00000543140 TK2O00142 265 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 GYG2O15488 501 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 TBC1D4O60343 1298 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 CALB2P22676 271 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 GRK2P25098 689 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 SLC8A1P32418 973 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 ACVRL1P37023 503 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 SLC1A2P43004 574 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 PSEN1P49768 467 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms