RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 GNAZP19086 355 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 FGFR3P22607 806 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 SLC26A3P40879 764 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 NUMBP49757 651 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 TUBP50607 506 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 PRMT2P55345 433 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 TBX4P57082 545 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 RPL10AP62906 217 aaKnown RBP10.01□□□□□ -0.81
SS18-205ENST00000542420 PDCD2Q16342 344 aaPredicted RBP10.01□□□□□ -0.81
SS18-205ENST00000542420 TRMT5Q32P41 509 aaKnown RBP10.01□□□□□ -0.81
SS18-205ENST00000542420 PARP15Q460N3 678 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 SLC39A12Q504Y0 691 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 FSCBQ5H9T9 825 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 SH2D4BQ5SQS7 431 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 THEMIS2Q5TEJ8 643 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 C6orf163Q5TEZ5 329 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 CES4AQ5XG92 561 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 KDELC1Q6UW63 502 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 NET1Q7Z628 596 aaPredicted RBP10.01□□□□□ -0.81
SS18-205ENST00000542420 RTN4RL1Q86UN2 441 aaPredicted RBP10.01□□□□□ -0.81
SS18-205ENST00000542420 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.01□□□□□ -0.81
SS18-205ENST00000542420 SCAMP5Q8TAC9 235 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 NSMCE1Q8WV22 266 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 MCUR1Q96AQ8 359 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 IMP4Q96G21 291 aaKnown RBP10.01□□□□□ -0.81
SS18-205ENST00000542420 RSRC1Q96IZ7 334 aaKnown RBP10.01□□□□□ -0.81
SS18-205ENST00000542420 TMEM209Q96SK2 561 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 SORT1Q99523 831 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 MRPL9Q9BYD2 267 aaKnown RBP10.01□□□□□ -0.81
SS18-205ENST00000542420 NMRAL1Q9HBL8 299 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 TLR8Q9NR97 1041 aaKnown RBP10.01□□□□□ -0.81
SS18-205ENST00000542420 FBXO6Q9NRD1 293 aaPredicted RBP10.01□□□□□ -0.81
SS18-205ENST00000542420 OXSMQ9NWU1 459 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 TLK1Q9UKI8 766 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 DNAJC16Q9Y2G8 782 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 NUMBLQ9Y6R0 609 aa10.01□□□□□ -0.81
SS18-205ENST00000542420 GOLGA8QA0A0J9YX86 632 aa10□□□□□ -0.81
SS18-205ENST00000542420 GOLGA8OA6NCC3 632 aa10□□□□□ -0.81
SS18-205ENST00000542420 GOLGA8NF8WBI6 632 aa10□□□□□ -0.81
SS18-205ENST00000542420 G3V2L1 256 aa10□□□□□ -0.81
SS18-205ENST00000542420 ATP9BO43861 1147 aa10□□□□□ -0.81
SS18-205ENST00000542420 DDHD2O94830 711 aa10□□□□□ -0.81
SS18-205ENST00000542420 ANP32DO95626 131 aa10□□□□□ -0.81
SS18-205ENST00000542420 TPBGLP0DKB5 382 aa10□□□□□ -0.81
SS18-205ENST00000542420 ARCN1P48444 511 aaKnown RBP10□□□□□ -0.81
SS18-205ENST00000542420 POU4F1Q01851 419 aa10□□□□□ -0.81
SS18-205ENST00000542420 IL10RBQ08334 325 aa10□□□□□ -0.81
SS18-205ENST00000542420 ZRSR2Q15696 482 aaKnown RBP10□□□□□ -0.81
SS18-205ENST00000542420 HSP90AA5PQ58FG0 334 aa10□□□□□ -0.81
SS18-205ENST00000542420 VARS2Q5ST30 1063 aaKnown RBP10□□□□□ -0.81
SS18-205ENST00000542420 LIPMQ5VYY2 423 aa10□□□□□ -0.81
SS18-205ENST00000542420 SETD3Q86TU7 594 aaPredicted RBP10□□□□□ -0.81
SS18-205ENST00000542420 C10orf107Q8IVU9 208 aa10□□□□□ -0.81
SS18-205ENST00000542420 C2CD4AQ8NCU7 369 aaPredicted RBP10□□□□□ -0.81
SS18-205ENST00000542420 CCDC126Q96EE4 140 aa10□□□□□ -0.81
SS18-205ENST00000542420 MFSD3Q96ES6 412 aa10□□□□□ -0.81
SS18-205ENST00000542420 ZNF570Q96NI8 536 aa10□□□□□ -0.81
SS18-205ENST00000542420 C1QTNF1Q9BXJ1 281 aa10□□□□□ -0.81
SS18-205ENST00000542420 CDH19Q9H159 772 aa10□□□□□ -0.81
SS18-205ENST00000542420 IARS2Q9NSE4 1012 aaKnown RBP10□□□□□ -0.81
SS18-205ENST00000542420 TRMT13Q9NUP7 481 aaKnown RBP10□□□□□ -0.81
SS18-205ENST00000542420 RBM22Q9NW64 420 aaKnown RBP eCLIP10□□□□□ -0.813e-7■■■■■ 29.6
SS18-205ENST00000542420 HSFX1Q9UBD0 423 aa10□□□□□ -0.81
SS18-205ENST00000542420 STOML1Q9UBI4 398 aa10□□□□□ -0.81
SS18-205ENST00000542420 IPO11Q9UI26 975 aaKnown RBP10□□□□□ -0.81
SS18-205ENST00000542420 GBF1Q92538 1859 aa10□□□□□ -0.81
SS18-205ENST00000542420 ZNF195O14628 629 aa10□□□□□ -0.81
SS18-205ENST00000542420 LIN7AO14910 233 aaPredicted RBP10□□□□□ -0.81
SS18-205ENST00000542420 NPHS1O60500 1241 aa10□□□□□ -0.81
SS18-205ENST00000542420 LUC7L3O95232 432 aaKnown RBP10□□□□□ -0.81
SS18-205ENST00000542420 PARNO95453 639 aaKnown RBP10□□□□□ -0.81
SS18-205ENST00000542420 PEX11BO96011 259 aa10□□□□□ -0.81
SS18-205ENST00000542420 PENKP01210 267 aaPredicted RBP10□□□□□ -0.81
SS18-205ENST00000542420 EPOP01588 193 aa10□□□□□ -0.81
SS18-205ENST00000542420 HLA-DQB2P05538 268 aa10□□□□□ -0.81
SS18-205ENST00000542420 ITGB1P05556 798 aa10□□□□□ -0.81
SS18-205ENST00000542420 ZDHHC11BP0C7U3 371 aa10□□□□□ -0.81
SS18-205ENST00000542420 YWHAQP27348 245 aa10□□□□□ -0.81
SS18-205ENST00000542420 NMBRP28336 390 aa10□□□□□ -0.81
SS18-205ENST00000542420 CLCN5P51795 746 aa10□□□□□ -0.81
SS18-205ENST00000542420 DNAJB13P59910 316 aa10□□□□□ -0.81
SS18-205ENST00000542420 TRIM32Q13049 653 aa10□□□□□ -0.81
SS18-205ENST00000542420 CAPRIN2Q6IMN6 1127 aaKnown RBP10□□□□□ -0.81
SS18-205ENST00000542420 STYXQ8WUJ0 223 aa10□□□□□ -0.81
SS18-205ENST00000542420 LINC01599Q8WXQ3 324 aa10□□□□□ -0.81
SS18-205ENST00000542420 TSPAN17Q96FV3 270 aa10□□□□□ -0.81
SS18-205ENST00000542420 CELF6Q96J87 481 aaKnown RBP10□□□□□ -0.81
SS18-205ENST00000542420 CCDC28BQ9BUN5 200 aa10□□□□□ -0.81
SS18-205ENST00000542420 TTLL2Q9BWV7 592 aa10□□□□□ -0.81
SS18-205ENST00000542420 DRC3Q9H069 523 aa10□□□□□ -0.81
SS18-205ENST00000542420 NMUR1Q9HB89 426 aa10□□□□□ -0.81
SS18-205ENST00000542420 GPAMQ9HCL2 828 aa10□□□□□ -0.81
SS18-205ENST00000542420 CHRAC1Q9NRG0 131 aa10□□□□□ -0.81
SS18-205ENST00000542420 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10□□□□□ -0.81
SS18-205ENST00000542420 PHF24Q9UPV7 400 aa10□□□□□ -0.81
SS18-205ENST00000542420 RAP2CQ9Y3L5 183 aa10□□□□□ -0.81
SS18-205ENST00000542420 LRRC42Q9Y546 428 aa10□□□□□ -0.81
SS18-205ENST00000542420 SNX10Q9Y5X0 201 aa10□□□□□ -0.81
SS18-205ENST00000542420 KIAA1671Q9BY89 1806 aa10□□□□□ -0.81
SS18-205ENST00000542420 TTC3P53804 2025 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms