RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 RCOR3Q9P2K3 495 aaPredicted RBP17.15■□□□□ 0.34
USP28-208ENST00000540438 MAFKO60675 156 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 TSPY1Q01534 308 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 ARCQ7LC44 396 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 PIM3Q86V86 326 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 HDAC11Q96DB2 347 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 SPC25Q9HBM1 224 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 GTSE1Q9NYZ3 720 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 IPO11Q9UI26 975 aaKnown RBP17.15■□□□□ 0.34
USP28-208ENST00000540438 E9PAM4 449 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 IRAK2O43187 625 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 SERPINA6P08185 405 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 SBK3P0C264 359 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 ARNTP27540 789 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 SERPINB6P35237 376 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 WASHC2DQ5SRD0 308 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 PIK3R6Q5UE93 754 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 ZC3HC1Q86WB0 502 aaKnown RBP17.15■□□□□ 0.34
USP28-208ENST00000540438 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.15■□□□□ 0.34
USP28-208ENST00000540438 HMCESQ96FZ2 354 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 TNFRSF12AQ9NP84 129 aa17.15■□□□□ 0.34
USP28-208ENST00000540438 A0A088AWK7 358 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 SLC35E2BP0CK96 405 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 SCNN1AP37088 669 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 LAYNQ6UX15 382 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 C4orf22Q6V702 233 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 TMEM86AQ8N2M4 240 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 TLE6Q9H808 572 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 GIMAP2Q9UG22 337 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 BIRC5O15392 142 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 PRPSAP1Q14558 356 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 RABGAP1LQ5R372 815 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 TIFABQ6ZNK6 161 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 CENPLQ8N0S6 344 aaPredicted RBP17.14■□□□□ 0.33
USP28-208ENST00000540438 CRISPLD1Q9H336 500 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 GLOD4Q9HC38 313 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 ZFYVE28Q9HCC9 887 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 DLGAP2Q9P1A6 1054 aa17.14■□□□□ 0.33
USP28-208ENST00000540438 A0A0U1RQF3 1178 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 FAM95CA0A1B0GW59 222 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 ZNF195O14628 629 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 CIB2O75838 187 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 BMP1P13497 986 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 CCR1P32246 355 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 ACVRL1P37023 503 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 NUDT2P50583 147 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 WNT3AP56704 352 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 KRT72Q14CN4 511 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 DENND5AQ6IQ26 1287 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 RGMBQ6NW40 437 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 SH3TC2Q8TF17 1288 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 NTAN1Q96AB6 310 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 ACBD6Q9BR61 282 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 RNF186Q9NXI6 227 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 DPPA5A6NC42 116 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 TRIM13O60858 407 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 GSTA2P09210 222 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 ENO3P13929 434 aaPredicted RBP17.13■□□□□ 0.33
USP28-208ENST00000540438 ARSDP51689 593 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 COPAP53621 1224 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 TUSC3Q13454 348 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 GALNT3Q14435 633 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 MGAT5BQ3V5L5 792 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 ITPRIPL1Q6GPH6 555 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 SNX32Q86XE0 403 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 IGSF8Q969P0 613 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 MIEF2Q96C03 454 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 GIT1Q9Y2X7 761 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 PDCD11Q14690 1871 aaKnown RBP17.13■□□□□ 0.33
USP28-208ENST00000540438 LRRC14BA6NHZ5 514 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 ZNF487B1APH4 448 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 DLX3O60479 287 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 CYBAP13498 195 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 CPOXP36551 454 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 CDH13P55290 713 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 SLC34A1Q06495 639 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 MBTPS1Q14703 1052 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 FAM171A1Q5VUB5 890 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 NAPEPLDQ6IQ20 393 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 FAM171BQ6P995 826 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 TMEM154Q6P9G4 183 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 DCLRE1AQ6PJP8 1040 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 IZUMO2Q6UXV1 221 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 TMC7Q7Z402 723 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 BLOC1S5Q8TDH9 187 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 EIF2B3Q9NR50 452 aaKnown RBP17.13■□□□□ 0.33
USP28-208ENST00000540438 NEU3Q9UQ49 428 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 PTGDR2Q9Y5Y4 395 aa17.13■□□□□ 0.33
USP28-208ENST00000540438 PPP6CO00743 305 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 F9P00740 461 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 LSM12Q3MHD2 195 aaKnown RBP17.12■□□□□ 0.33
USP28-208ENST00000540438 CLLU1OSQ5K130 101 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 PM20D1Q6GTS8 502 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 RNF111Q6ZNA4 994 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 THEM5Q8N1Q8 247 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 IL22Q9GZX6 179 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 STOML1Q9UBI4 398 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 SOX13Q9UN79 622 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 PTCH2Q9Y6C5 1203 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 TET1Q8NFU7 2136 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms