RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 NFATC3Q12968 1075 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 LINC00303Q3SY05 128 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 IGF2-ASQ6U949 168 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 ZSCAN30Q86W11 494 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 SLC25A45Q8N413 288 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 SLC35G2Q8TBE7 412 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 KIAA1524Q8TCG1 905 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 CLEC4CQ8WTT0 213 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 RNF139Q8WU17 664 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 IRGQQ8WZA9 623 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 ALS2CR12Q96Q35 445 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 DCLK3Q9C098 648 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 AASDHPPTQ9NRN7 309 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 STARD5Q9NSY2 213 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 ANKMY1Q9P2S6 941 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 ANAPC7Q9UJX3 599 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 PLA2G4CQ9UP65 541 aa12.82□□□□□ -0.36
CLSTN3-208ENST00000538933 NYNRINQ9P2P1 1898 aaKnown RBP12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 RCCD1A6NED2 376 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 FAM47DPA6NHR8 397 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 SIGLEC16A6NMB1 481 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 MYO1FO00160 1098 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 EFSO43281 561 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 SUV39H1O43463 412 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 KIF5CO60282 957 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 OPA1O60313 960 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 LTFP02788 710 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 GLI1P08151 1106 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 RALAP11233 206 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 ITGB6P18564 788 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 SCNN1AP37088 669 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 PSEN1P49768 467 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 CCR5P51681 352 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 YWHAGP61981 247 aaKnown RBP eCLIP12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 YWHAZP63104 245 aaKnown RBP12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 COG7P83436 770 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 ZNF211Q13398 564 aaPredicted RBP12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 MAMLD1Q13495 774 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 TTC31Q49AM3 519 aaPredicted RBP12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 ZNF776Q68DI1 518 aaPredicted RBP12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 PLEKHA7Q6IQ23 1121 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 OLFML1Q6UWY5 402 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 RSRC2Q7L4I2 434 aaKnown RBP12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 SLC26A9Q7LBE3 791 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 DENND1CQ8IV53 801 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 SCML4Q8N228 414 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 OR2T34Q8NGX1 318 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 DDI1Q8WTU0 396 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 NDRG1Q92597 394 aaKnown RBP12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 MYO19Q96H55 970 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 CALR3Q96L12 384 aaKnown RBP12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 FAM117AQ9C073 453 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 LACRTQ9GZZ8 138 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 NEUROG2Q9H2A3 272 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 POPDC2Q9HBU9 364 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 ASNSD1Q9NWL6 643 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 FBXL12Q9NXK8 326 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 CLIC5Q9NZA1 410 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 LCMT1Q9UIC8 334 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 STAP1Q9ULZ2 295 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 USP3Q9Y6I4 520 aa12.81□□□□□ -0.36
CLSTN3-208ENST00000538933 BTNL10A8MVZ5 291 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 LZTS3O60299 673 aaPredicted RBP12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 DAB1O75553 588 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 MOCS3O95396 460 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 GJB6O95452 261 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 CYBBP04839 570 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 HMBSP08397 361 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 DLDP09622 509 aaKnown RBP12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 GPD1P21695 349 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 PSMA2P25787 234 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 SDC4P31431 198 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 SSR1P43307 286 aaKnown RBP12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 NFKB2Q00653 900 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 MESDQ14696 234 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 ARL13BQ3SXY8 428 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 ZNF574Q6ZN55 896 aaPredicted RBP12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 ZNF662Q6ZS27 426 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 CHST9Q7L1S5 443 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 TADA2BQ86TJ2 420 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 SYCE1Q8N0S2 351 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 OXR1Q8N573 874 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 RNF10Q8N5U6 811 aaKnown RBP12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 MFSD2AQ8NA29 543 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 WFIKKN2Q8TEU8 576 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 PRR11Q96HE9 360 aaPredicted RBP12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 ABCC13Q9NSE7 274 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 TRIM10Q9UDY6 481 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 SUN2Q9UH99 717 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 IP6K2Q9UHH9 426 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 SCML1Q9UN30 329 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 NCKAP1Q9Y2A7 1128 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 PAXBP1Q9Y5B6 917 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 CELSR2Q9HCU4 2923 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 CRYBG3Q68DQ2 2970 aa12.8□□□□□ -0.36
CLSTN3-208ENST00000538933 CREBBPQ92793 2442 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 A0A0U1RQJ8 604 aa12.79□□□□□ -0.36
CLSTN3-208ENST00000538933 LRRC72A6NJI9 287 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms