RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 CYP2J2P51589 502 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 DEFA1P59665 94 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 DEFA3P59666 94 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 RPL10AP62906 217 aaKnown RBP12.59□□□□□ -0.39
USP3-203ENST00000538686 DYNLL1P63167 89 aaKnown RBP12.59□□□□□ -0.39
USP3-203ENST00000538686 RACK1P63244 317 aaKnown RBP12.59□□□□□ -0.39
USP3-203ENST00000538686 TNK2Q07912 1038 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 AQP6Q13520 282 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 SKIV2LQ15477 1246 aaKnown RBP12.59□□□□□ -0.39
USP3-203ENST00000538686 ATP6AP1Q15904 470 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 RSBN1LQ6PCB5 846 aaPredicted RBP12.59□□□□□ -0.39
USP3-203ENST00000538686 POTEGQ6S5H5 508 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 USP51Q70EK9 711 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 DGLUCYQ7Z3D6 616 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 HDDC2Q7Z4H3 204 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 ADGRF2Q8IZF7 708 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.59□□□□□ -0.39
USP3-203ENST00000538686 CCDC185Q8N715 623 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 TMC2Q8TDI7 906 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 DDX1Q92499 740 aaKnown RBP12.59□□□□□ -0.39
USP3-203ENST00000538686 ZFYVE19Q96K21 471 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 CITED4Q96RK1 184 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 MMP19Q99542 508 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 C17orf62Q9BQA9 187 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 UNC93B1Q9H1C4 597 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 DPEP3Q9H4B8 488 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 PLEKHA5Q9HAU0 1116 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 POLE4Q9NR33 117 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 ADPRHL2Q9NX46 363 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 SMPD3Q9NY59 655 aaPredicted RBP12.59□□□□□ -0.39
USP3-203ENST00000538686 ATP6V1HQ9UI12 483 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 AP3M1Q9Y2T2 418 aa12.59□□□□□ -0.39
USP3-203ENST00000538686 C12orf71A8MTZ7 269 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 PLIN3O60664 434 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 C1QAP02745 245 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 DPP6P42658 865 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 PTPN9P43378 593 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 GABARAPL2P60520 117 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 GAD2Q05329 585 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 SMARCB1Q12824 385 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 VWA5B1Q5TIE3 1220 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 FAM171BQ6P995 826 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 XKRXQ6PP77 449 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 SLC16A12Q6ZSM3 486 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 PRSS48Q7RTY5 328 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 POLNQ7Z5Q5 900 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 SPRED1Q7Z699 444 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 SNX29P2Q8IUI4 249 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 CADM2Q8N3J6 435 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 TMEM174Q8WUU8 243 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 VCPIP1Q96JH7 1222 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 SLC45A3Q96JT2 553 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 CEP170P1Q96L14 293 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 FAM20AQ96MK3 541 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 LRRC40Q9H9A6 602 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 TOR4AQ9NXH8 423 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 IP6K2Q9UHH9 426 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 DNMT3LQ9UJW3 386 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 ZNRF3Q9ULT6 936 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.58□□□□□ -0.39
USP3-203ENST00000538686 GRIP1Q9Y3R0 1128 aa12.58□□□□□ -0.39
USP3-203ENST00000538686 hCG_1818297A0A087WSY0 165 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 GRIN3BO60391 1043 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 SYNCRIPO60506 623 aaKnown RBP12.58□□□□□ -0.4
USP3-203ENST00000538686 ZNF254O75437 659 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 GABARAPO95166 117 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 SEC24AO95486 1093 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 JUNP05412 331 aaKnown RBP12.58□□□□□ -0.4
USP3-203ENST00000538686 RPL22P35268 128 aaKnown RBP12.58□□□□□ -0.4
USP3-203ENST00000538686 HTR2BP41595 481 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 NSFP46459 744 aaKnown RBP12.58□□□□□ -0.4
USP3-203ENST00000538686 ARCN1P48444 511 aaKnown RBP12.58□□□□□ -0.4
USP3-203ENST00000538686 VAMP7P51809 220 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 ATXN3P54252 364 aaPredicted RBP12.58□□□□□ -0.4
USP3-203ENST00000538686 GPLD1P80108 840 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 GHRHRQ02643 423 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 CHRNDQ07001 517 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 SLC13A2Q13183 592 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 PCLAFQ15004 111 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 CARTPTQ16568 116 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 ZFYVE27Q5T4F4 411 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 DESI1Q6ICB0 168 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 ZNF767PQ75MW2 155 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 PIWIL3Q7Z3Z3 882 aaKnown RBP12.58□□□□□ -0.4
USP3-203ENST00000538686 RNF148Q8N7C7 305 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 SHCBP1Q8NEM2 672 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 PSMA8Q8TAA3 256 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 PROX1Q92786 737 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 LRRC39Q96DD0 335 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 C1QTNF7Q9BXJ2 289 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 TAF1LQ8IZX4 1826 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 FER1L6Q2WGJ9 1857 aa12.58□□□□□ -0.4
USP3-203ENST00000538686 NOS1APO75052 506 aaPredicted RBP12.57□□□□□ -0.4
USP3-203ENST00000538686 OR7A10O76100 309 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 ASNSP08243 561 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 AKR1B1P15121 316 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 HCAR3P49019 387 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 BCAMP50895 628 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 PSME3P61289 254 aa12.57□□□□□ -0.4
USP3-203ENST00000538686 KCNA1Q09470 495 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms