RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 LEFTY1O75610 366 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 TMCC1O94876 653 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 PRNPP04156 253 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 KRT7P08729 469 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 MAOBP27338 520 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 CYLC1P35663 651 aaPredicted RBP13.2□□□□□ -0.3
VPS28-216ENST00000533806 CCNHP51946 323 aaPredicted RBP13.2□□□□□ -0.3
VPS28-216ENST00000533806 ADPRHP54922 357 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 CDH6P55285 790 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 IRX4P78413 519 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 ARHGAP8P85298 464 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 CNTN1Q12860 1018 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 MMRN1Q13201 1228 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 PDK2Q15119 407 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 MYLK3Q32MK0 819 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 WDR45BQ5MNZ6 344 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 SYCP2LQ5T4T6 812 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 PIP5KL1Q5T9C9 394 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 ARHGAP36Q6ZRI8 547 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 NETO2Q8NC67 525 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 OR2T34Q8NGX1 318 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 PCDH19Q8TAB3 1148 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 CEP76Q8TAP6 659 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 ARRDC3Q96B67 414 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 OMDQ99983 421 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 HEPHQ9BQS7 1158 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 ZNF670Q9BS34 389 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 HDAC8Q9BY41 377 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 KDM4CQ9H3R0 1056 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 EBF2Q9HAK2 575 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 DLL3Q9NYJ7 618 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 HECAQ9UBI9 543 aaPredicted RBP13.2□□□□□ -0.3
VPS28-216ENST00000533806 LHX3Q9UBR4 397 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 SALL4Q9UJQ4 1053 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 FARP1Q9Y4F1 1045 aaPredicted RBP13.2□□□□□ -0.3
VPS28-216ENST00000533806 THADAQ6YHU6 1953 aa13.2□□□□□ -0.3
VPS28-216ENST00000533806 ATXN2Q99700 1313 aaKnown RBP13.19□□□□□ -0.3
VPS28-216ENST00000533806 ARHGAP42A6NI28 874 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 ZNF487B1APH4 448 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 C1QTNF3-AMACRE9PGA6 284 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 CDX4O14627 284 aaPredicted RBP13.19□□□□□ -0.3
VPS28-216ENST00000533806 KHNYNO15037 678 aaKnown RBP13.19□□□□□ -0.3
VPS28-216ENST00000533806 LATO43561 262 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 PLRG1O43660 514 aaKnown RBP13.19□□□□□ -0.3
VPS28-216ENST00000533806 BNIP3LO60238 219 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 BUB1BO60566 1050 aaPredicted RBP13.19□□□□□ -0.3
VPS28-216ENST00000533806 MAFKO60675 156 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 POP4O95707 220 aaKnown RBP13.19□□□□□ -0.3
VPS28-216ENST00000533806 SERPINF2P08697 491 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 GKP32189 559 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 SLC1A1P43005 524 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 SSR1P43307 286 aaKnown RBP13.19□□□□□ -0.3
VPS28-216ENST00000533806 RECQLP46063 649 aaPredicted RBP13.19□□□□□ -0.3
VPS28-216ENST00000533806 CCR5P51681 352 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 LIMK1P53667 647 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 IL10RBQ08334 325 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 DUOXA1Q1HG43 343 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 ANKRD20A8PQ5CZ79 823 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 KIAA0895LQ68EN5 471 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 NCEH1Q6PIU2 408 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 TMCO3Q6UWJ1 677 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.19□□□□□ -0.3
VPS28-216ENST00000533806 VSIG1Q86XK7 387 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 PQLC3Q8N755 202 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 GANCQ8TET4 914 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 RAPGEF5Q92565 580 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 LRIG1Q96JA1 1093 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 BAG1Q99933 345 aaPredicted RBP13.19□□□□□ -0.3
VPS28-216ENST00000533806 TM6SF2Q9BZW4 377 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 IPO11Q9UI26 975 aaKnown RBP13.19□□□□□ -0.3
VPS28-216ENST00000533806 NUMA1Q14980 2115 aa13.19□□□□□ -0.3
VPS28-216ENST00000533806 LRRC72A6NJI9 287 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 TMEM110-MUSTN1A8MSY1 372 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 BTNL10A8MVZ5 291 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 KPNA3O00505 521 aaPredicted RBP13.18□□□□□ -0.3
VPS28-216ENST00000533806 TM4SF5O14894 197 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 PJA2O43164 708 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 KDELR1P24390 212 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 ITGB7P26010 798 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 CD27P26842 260 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 DNA2P51530 1060 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 SNRPD1P62314 119 aaKnown RBP13.18□□□□□ -0.3
VPS28-216ENST00000533806 KRT81Q14533 505 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 PAFAH1B3Q15102 231 aaKnown RBP13.18□□□□□ -0.3
VPS28-216ENST00000533806 SPA17Q15506 151 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 POM121L1PQ3SYA9 428 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 TRIM61Q5EBN2 209 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 ATXN7L2Q5T6C5 722 aaPredicted RBP13.18□□□□□ -0.3
VPS28-216ENST00000533806 NCBP2-AS2Q69YL0 99 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 ERN2Q76MJ5 926 aaKnown RBP13.18□□□□□ -0.3
VPS28-216ENST00000533806 RABEPKQ7Z6M1 372 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 KCTD6Q8NC69 237 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 OR14C36Q8NHC7 312 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 GRIN3AQ8TCU5 1115 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 RMDN1Q96DB5 314 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 LACRTQ9GZZ8 138 aa13.18□□□□□ -0.3
VPS28-216ENST00000533806 UBA2Q9UBT2 640 aaPredicted RBP13.18□□□□□ -0.3
VPS28-216ENST00000533806 EIF2B4Q9UI10 523 aaKnown RBP13.18□□□□□ -0.3
VPS28-216ENST00000533806 TPX2Q9ULW0 747 aaKnown RBP13.18□□□□□ -0.3
VPS28-216ENST00000533806 SLC6A14Q9UN76 642 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms