RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 MMEP08473 750 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 CKMT1AP12532 417 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 ITPKBP27987 946 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 L1CAMP32004 1257 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 CCNHP51946 323 aaPredicted RBP11.57□□□□□ -0.56
VPS28-214ENST00000531032 CLDN2P57739 230 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 RPS21P63220 83 aaKnown RBP11.57□□□□□ -0.56
VPS28-214ENST00000531032 DAB2P98082 770 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 NRG1Q02297 640 aaPredicted RBP11.57□□□□□ -0.56
VPS28-214ENST00000531032 FGL2Q14314 439 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 HS1BP3Q53T59 392 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 CARD16Q5EG05 197 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 MANEALQ5VSG8 457 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 NAA35Q5VZE5 725 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 KYAT3Q6YP21 454 aaKnown RBP11.57□□□□□ -0.56
VPS28-214ENST00000531032 Q6ZSR6 202 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 ZSCAN30Q86W11 494 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 DCP2Q8IU60 420 aaKnown RBP11.57□□□□□ -0.56
VPS28-214ENST00000531032 PLPP6Q8IY26 295 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 DRC7Q8IY82 874 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 CPA5Q8WXQ8 436 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 ISG20Q96AZ6 181 aaKnown RBP11.57□□□□□ -0.56
VPS28-214ENST00000531032 BMFQ96LC9 184 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 HEPHQ9BQS7 1158 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 SLC17A9Q9BYT1 436 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 RETREG1Q9H6L5 497 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 NLGN3Q9NZ94 848 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 DACH1Q9UI36 760 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 NOCTQ9UK39 431 aaKnown RBP11.57□□□□□ -0.56
VPS28-214ENST00000531032 NEU3Q9UQ49 428 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 FCF1Q9Y324 198 aaKnown RBP11.57□□□□□ -0.56
VPS28-214ENST00000531032 FADS3Q9Y5Q0 445 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 HS3ST3A1Q9Y663 406 aa11.57□□□□□ -0.56
VPS28-214ENST00000531032 TDRD6O60522 2096 aaKnown RBP11.56□□□□□ -0.56
VPS28-214ENST00000531032 LY6G6EA0A0G2JKS1 128 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 NEMP2A6NFY4 417 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 PES1O00541 588 aaKnown RBP11.56□□□□□ -0.56
VPS28-214ENST00000531032 SCAMP1O15126 338 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 RRP8O43159 456 aaKnown RBP11.56□□□□□ -0.56
VPS28-214ENST00000531032 MT-CO3P00414 261 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 CYP1A1P04798 512 aaPredicted RBP11.56□□□□□ -0.56
VPS28-214ENST00000531032 GP1BAP07359 652 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 EEF1GP26641 437 aaKnown RBP11.56□□□□□ -0.56
VPS28-214ENST00000531032 ETFBP38117 255 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 ATP11AP98196 1134 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 RAB6CQ53S08 254 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 TCP11X2Q5H9J9 407 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 CDCP2Q5VXM1 449 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 LRRC69Q6ZNQ3 347 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 PARS2Q7L3T8 475 aaKnown RBP11.56□□□□□ -0.56
VPS28-214ENST00000531032 PTAR1Q7Z6K3 402 aaPredicted RBP11.56□□□□□ -0.56
VPS28-214ENST00000531032 NLRP14Q86W24 1093 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 ZNF677Q86XU0 584 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 EMC1Q8N766 993 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 FAM181AQ8N9Y4 354 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 BAP1Q92560 729 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 FGF11Q92914 225 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 FEM1CQ96JP0 617 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 GBP4Q96PP9 640 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 UBL7Q96S82 380 aaPredicted RBP11.56□□□□□ -0.56
VPS28-214ENST00000531032 DUSP23Q9BVJ7 150 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 RAB6CQ9H0N0 254 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 NUP62CLQ9H1M0 184 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 GANQ9H2C0 597 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 PRORYQ9H606 182 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 CAAP1Q9H8G2 361 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 METTL5Q9NRN9 209 aaKnown RBP11.56□□□□□ -0.56
VPS28-214ENST00000531032 SAMSN1Q9NSI8 373 aaKnown RBP11.56□□□□□ -0.56
VPS28-214ENST00000531032 OR12D3Q9UGF7 316 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 PTPRQQ9UMZ3 2332 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 ACTL7AQ9Y615 435 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 U3KQA8 63 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 ASXL3Q9C0F0 2248 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 BPTFQ12830 3046 aa11.56□□□□□ -0.56
VPS28-214ENST00000531032 SPTY2D1-AS1A0A0U1RR47 76 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 POM121BA6NF01 834 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 GOLGA6L22H0YM25 854 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 K7ESM1 405 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 RAD51BO15315 384 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 OPA1O60313 960 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 PAK4O96013 591 aaPredicted RBP11.55□□□□□ -0.56
VPS28-214ENST00000531032 CSF2P04141 144 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 ALPPL2P10696 532 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 NME1P15531 152 aaKnown RBP11.55□□□□□ -0.56
VPS28-214ENST00000531032 RHOQP17081 205 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 MMP8P22894 467 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 ADRA1BP35368 520 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 ACTN2P35609 894 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 ACVRL1P37023 503 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 RABIFP47224 123 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 MAPKAPK2P49137 400 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 DNA2P51530 1060 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 GEMIN4P57678 1058 aaKnown RBP11.55□□□□□ -0.56
VPS28-214ENST00000531032 HNRNPKP61978 463 aaKnown RBP eCLIP11.55□□□□□ -0.565e-6■□□□□ 11.2
VPS28-214ENST00000531032 FMO1Q01740 532 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 CDR2Q01850 454 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 MAPK8IP2Q13387 824 aaPredicted RBP11.55□□□□□ -0.56
VPS28-214ENST00000531032 FZD2Q14332 565 aa11.55□□□□□ -0.56
VPS28-214ENST00000531032 C15orf59Q2T9L4 293 aaPredicted RBP11.55□□□□□ -0.56
VPS28-214ENST00000531032 TBC1D25Q3MII6 688 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms