RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 MILR1Q7Z6M3 343 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 CAMK1DQ8IU85 385 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 EID3Q8N140 333 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 RBM15BQ8NDT2 890 aaKnown RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 CDK5RAP1Q96SZ6 601 aaKnown RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 APOBEC3GQ9HC16 384 aaKnown RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 MRPL42Q9Y6G3 142 aaKnown RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 B4GALT5O43286 388 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 GRIN3BO60391 1043 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 IFNA14P01570 189 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 RHBDF2Q6PJF5 856 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 ENDOVQ8N8Q3 282 aaKnown RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 LRRN4Q8WUT4 740 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 CLEC4DQ8WXI8 215 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 DDX1Q92499 740 aaKnown RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 PGLYRP2Q96PD5 576 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 GRIP2Q9C0E4 1043 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 POLR1EQ9GZS1 481 aaKnown RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 ALG9Q9H6U8 611 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 PCDH18Q9HCL0 1135 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 SFMBT1Q9UHJ3 866 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 TOGARAM1Q9Y4F4 1720 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 C2orf71A6NGG8 1288 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 ITGB6P18564 788 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 NEK3P51956 506 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 GLT6D1Q7Z4J2 308 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 SLC41A1Q8IVJ1 513 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 FBXW8Q8N3Y1 598 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 RP9Q8TA86 221 aaKnown RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 SERAC1Q96JX3 654 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 MTG1Q9BT17 334 aaPredicted RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 MTFR1LQ9H019 292 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 GBA2Q9HCG7 927 aaPredicted RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 BTBD7Q9P203 1132 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 PRR5-ARHGAP8B1AHC4 643 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 EFCAB14O75071 495 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 PSMB9P28065 219 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 PSMD7P51665 324 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 ARHGAP8P85298 464 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 SREBF2Q12772 1141 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 KRR1Q13601 381 aaKnown RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 SIX1Q15475 284 aaPredicted RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 RNF220Q5VTB9 566 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 ISLR2Q6UXK2 745 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 ABHD15Q6UXT9 468 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 PACS1Q6VY07 963 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 DNAJC14Q6Y2X3 702 aaPredicted RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 C11orf96Q7Z7L8 435 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 ZDHHC13Q8IUH4 622 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 TNS4Q8IZW8 715 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 PLEKHO2Q8TD55 490 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 HGH1Q9BTY7 390 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 DHX33Q9H6R0 707 aaKnown RBP13.98□□□□□ -0.17
SYNPO-205ENST00000522122 DNAJC28Q9NX36 388 aa13.98□□□□□ -0.17
SYNPO-205ENST00000522122 LRCH4O75427 683 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 SNRPB2P08579 225 aaKnown RBP13.97□□□□□ -0.17
SYNPO-205ENST00000522122 SOX6P35712 828 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 CHI3L1P36222 383 aaPredicted RBP13.97□□□□□ -0.17
SYNPO-205ENST00000522122 MATKP42679 507 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 PSME3P61289 254 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 TP53BP2Q13625 1128 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 TTC7BQ86TV6 843 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 STAG3L4Q8TBR4 150 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 PHF21AQ96BD5 680 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 FBXL18Q96ME1 805 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 NTPCRQ9BSD7 190 aaKnown RBP13.97□□□□□ -0.17
SYNPO-205ENST00000522122 C12orf65Q9H3J6 166 aaKnown RBP13.97□□□□□ -0.17
SYNPO-205ENST00000522122 HPS4Q9NQG7 708 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 C1orf232A0A0U1RR37 186 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 SEC22BO75396 215 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 VNN1O95497 513 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 KRT75O95678 551 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 FESP07332 822 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 UQCRBP14927 111 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 MSH3P20585 1137 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 VGLL4Q14135 290 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 PFKFB4Q16877 469 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 C9orf131Q5VYM1 1079 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 HERC6Q8IVU3 1022 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 DCAKDQ8WVC6 231 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 ZFYVE19Q96K21 471 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 C6orf203Q9P0P8 240 aaPredicted RBP13.97□□□□□ -0.17
SYNPO-205ENST00000522122 FAM50BQ9Y247 325 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 FMO4P31512 558 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 GPC1P35052 558 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 HK2P52789 917 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 CAMK2GQ13555 558 aaPredicted RBP13.97□□□□□ -0.17
SYNPO-205ENST00000522122 PWP1Q13610 501 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 PRKD1Q15139 912 aaPredicted RBP13.97□□□□□ -0.17
SYNPO-205ENST00000522122 ARHGAP15Q53QZ3 475 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 B3GNT6Q6ZMB0 384 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 ITFG1Q8TB96 612 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 KCTD4Q8WVF5 259 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 SYT11Q9BT88 431 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 EPB41L4BQ9H329 900 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 SNX15Q9NRS6 342 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 PLA2G4CQ9UP65 541 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 TPSB2P20231 275 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 CLCN5P51795 746 aa13.97□□□□□ -0.17
SYNPO-205ENST00000522122 TPSAB1Q15661 275 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms