RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 FCRL2Q96LA5 508 aaPredicted RBP12.83□□□□□ -0.36
USP53-209ENST00000514665 TM6SF2Q9BZW4 377 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 CHRAC1Q9NRG0 131 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 CATSPERZQ9NTU4 200 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 ZNF112Q9UJU3 913 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 ADAM28Q9UKQ2 775 aa12.83□□□□□ -0.36
USP53-209ENST00000514665 MYPNQ86TC9 1320 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 SMIM28A0A1B0GU29 152 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 TMEM114B3SHH9 223 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 HS6ST1O60243 411 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 STAU1O95793 577 aaKnown RBP12.82□□□□□ -0.36
USP53-209ENST00000514665 MPSTP25325 297 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 GSTT1P30711 240 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 HADHBP55084 474 aaKnown RBP12.82□□□□□ -0.36
USP53-209ENST00000514665 WDR4P57081 412 aaKnown RBP12.82□□□□□ -0.36
USP53-209ENST00000514665 ELAVL2Q12926 359 aaKnown RBP12.82□□□□□ -0.36
USP53-209ENST00000514665 PPIL2Q13356 520 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 SLC25A52Q3SY17 297 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 LPCAT4Q643R3 524 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 TXNRD3NBQ6F5E7 133 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 ZNF572Q7Z3I7 529 aaPredicted RBP12.82□□□□□ -0.36
USP53-209ENST00000514665 FBXO30Q8TB52 745 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 STAG3L4Q8TBR4 150 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 GPR152Q8TDT2 470 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 SEPT8Q92599 483 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 MFSD3Q96ES6 412 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 SLC4A5Q9BY07 1137 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 DUSP16Q9BY84 665 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 CAPN10Q9HC96 672 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 KLQ9UEF7 1012 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 HBS1LQ9Y450 684 aaKnown RBP12.82□□□□□ -0.36
USP53-209ENST00000514665 CABYRO75952 493 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 MTA2O94776 668 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 HGFP14210 728 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 PIK3R1P27986 724 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 NEK3P51956 506 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 ZNF135P52742 658 aaPredicted RBP12.82□□□□□ -0.36
USP53-209ENST00000514665 PTP4A2Q12974 167 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 TRMT10BQ6PF06 316 aaKnown RBP12.82□□□□□ -0.36
USP53-209ENST00000514665 ADGRD1Q6QNK2 874 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 ZNF516Q92618 1163 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 NTPCRQ9BSD7 190 aaKnown RBP12.82□□□□□ -0.36
USP53-209ENST00000514665 ST3GAL5Q9UNP4 418 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 CHKBQ9Y259 395 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 KPNA6O60684 536 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 TCF4P15884 667 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 HOXD13P35453 343 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 RFX3P48380 749 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 KPNA1P52294 538 aaPredicted RBP12.82□□□□□ -0.36
USP53-209ENST00000514665 DEFA1P59665 94 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 DEFA3P59666 94 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 ATP1A4Q13733 1029 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 KCTD21Q4G0X4 260 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 LIPMQ5VYY2 423 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 C9orf57Q5W0N0 161 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 TSHZ1Q6ZSZ6 1077 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 NUDT18Q6ZVK8 323 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 HPS6Q86YV9 775 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.82□□□□□ -0.36
USP53-209ENST00000514665 ITFG1Q8TB96 612 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 H2AFY2Q9P0M6 372 aaPredicted RBP12.82□□□□□ -0.36
USP53-209ENST00000514665 KANSL3Q9P2N6 904 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 EGFL7Q9UHF1 273 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 CDH9Q9ULB4 789 aa12.82□□□□□ -0.36
USP53-209ENST00000514665 A0A087X1B8 175 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 FGF10O15520 208 aaPredicted RBP12.81□□□□□ -0.36
USP53-209ENST00000514665 TMEM63AO94886 807 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 DLGAP3O95886 979 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 BCL10O95999 233 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 MAPK1P28482 360 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 ZDHHC13Q8IUH4 622 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 CDYL2Q8N8U2 506 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 MTFMTQ96DP5 389 aaKnown RBP12.81□□□□□ -0.36
USP53-209ENST00000514665 MED8Q96G25 268 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 BPIFA1Q9NP55 256 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 CNGB3Q9NQW8 809 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 RABGEF1Q9UJ41 708 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 KIF1AQ12756 1690 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 FFAR3O14843 346 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 GPR42O15529 346 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 MSI1O43347 362 aaKnown RBP12.81□□□□□ -0.36
USP53-209ENST00000514665 ABL2P42684 1182 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 SLC16A1P53985 500 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 ATXN1P54253 815 aaKnown RBP12.81□□□□□ -0.36
USP53-209ENST00000514665 RIPK1Q13546 671 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 DDR2Q16832 855 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 PRMT9Q6P2P2 845 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 VSTM1Q6UX27 236 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 STRADAQ7RTN6 431 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 AMIGO3Q86WK7 504 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 SYTL1Q8IYJ3 562 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 TBC1D19Q8N5T2 526 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 DLG3Q92796 817 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 NPAS2Q99743 824 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 UXTQ9UBK9 157 aaPredicted RBP12.81□□□□□ -0.36
USP53-209ENST00000514665 SLC27A5Q9Y2P5 690 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 CD52P31358 61 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 CYP2C18P33260 490 aa12.81□□□□□ -0.36
USP53-209ENST00000514665 CHI3L1P36222 383 aaPredicted RBP12.81□□□□□ -0.36
USP53-209ENST00000514665 CHN2P52757 468 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms