RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ITGAVP06756 1048 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 FOSL1P15407 271 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 CBLP22681 906 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 GABRB2P47870 512 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 B2MP61769 119 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 GBE1Q04446 702 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 TBC1D10BQ4KMP7 808 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 TRMT10BQ6PF06 316 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 EPGNQ6UW88 154 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 CDR2LQ86X02 465 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 OR2T34Q8NGX1 318 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 CELF1Q92879 486 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 REXO4Q9GZR2 422 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 GMPR2Q9P2T1 348 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 CFL2Q9Y281 166 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 PHRF1Q9P1Y6 1649 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 AREL1O15033 823 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 CPNE3O75131 537 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 GSRP00390 522 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 HTR1BP28222 390 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 CCDC14Q49A88 953 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 TBCELQ5QJ74 424 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 ZNF773Q6PK81 442 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 LYSMD2Q8IV50 215 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 TNS4Q8IZW8 715 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 TDRD5Q8NAT2 981 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 NDNFQ8TB73 568 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 ZNF384Q8TF68 577 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 HSFY1Q96LI6 401 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 C2orf40Q9H1Z8 148 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 BAG5Q9UL15 447 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 ZNRF3Q9ULT6 936 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 OAZ3Q9UMX2 235 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 EI24O14681 340 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 SOX11P35716 441 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 CDC20Q12834 499 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 PCLAFQ15004 111 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 PRR16Q569H4 304 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 STEAP3Q658P3 488 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 GTF2IRD2BQ6EKJ0 949 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 HAUS6Q7Z4H7 955 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 GTF2IRD2Q86UP8 949 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 SYTL1Q8IYJ3 562 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 SIMC1Q8NDZ2 872 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 OR6F1Q8NGZ6 308 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 SEPT8Q92599 483 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 SNAPC3Q92966 411 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 ZC4H2Q9NQZ6 224 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 ZNF358Q9NW07 568 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 COMMD8Q9NX08 183 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 SEPT10Q9P0V9 454 aa12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 CPSF3Q9UKF6 684 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 PNMA8BQ9ULN7 279 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-213ENST00000511496 MICAL3Q7RTP6 2002 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 A0A0G2JMP0 313 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 USP17L5A8MUK1 530 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 GRIN3BO60391 1043 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 SLC4A1P02730 911 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 PTP4A2Q12974 167 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 DGUOKQ16854 277 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 IMPG1Q17R60 797 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 CCNYL2Q5T2Q4 361 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 LRRC20Q8TCA0 184 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 HERVK_113Q902F9 699 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 VMP1Q96GC9 406 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 LRRC40Q9H9A6 602 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 CYP26B1Q9NR63 512 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 SLC17A6Q9P2U8 582 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 CDY2AQ9Y6F7 541 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 CDY1Q9Y6F8 540 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 TEX264Q9Y6I9 313 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 KCNU1A8MYU2 1149 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 USP17L15C9J2P7 530 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 USP17L13C9JLJ4 530 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 USP17L11C9JVI0 530 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 USP17L18D6R9N7 530 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 USP17L22D6RA61 530 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 USP17L17D6RBQ6 530 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 USP17L19D6RCP7 530 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 USP17L20D6RJB6 530 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 CST8O60676 142 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 VBP1P61758 197 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 RPL7AP62424 266 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 USP17L24Q0WX57 530 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 SLC12A1Q13621 1099 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 GNA13Q14344 377 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 DUSP7Q16829 419 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 SMTNL2Q2TAL5 461 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 Q5BKY6 102 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 PPM1JQ5JR12 505 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 ODR4Q5SWX8 454 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 LIN9Q5TKA1 542 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 PLA2G4FQ68DD2 849 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 ZNF438Q7Z4V0 828 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 C12orf56Q8IXR9 622 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 PAF1Q8N7H5 531 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 FAM83FQ8NEG4 500 aaPredicted RBP12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 FAF2Q96CS3 445 aa12.19□□□□□ -0.46
LIMCH1-213ENST00000511496 ALOXE3Q9BYJ1 711 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms