RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 RAB30Q15771 203 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 TBRG1Q3YBR2 411 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 CYB5RLQ6IPT4 315 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 FOXL2NBQ6ZUU3 175 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 KLHDC8BQ8IXV7 354 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 VPS52Q8N1B4 723 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 PGBD5Q8N414 524 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 NEXN-AS1Q8NBZ9 246 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 RFWD2Q8NHY2 731 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 JDP2Q8WYK2 163 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 USP13Q92995 863 aaPredicted RBP2.98□□□□□ -1.93
NUP54-208ENST00000508604 TEFMQ96QE5 360 aaKnown RBP2.98□□□□□ -1.93
NUP54-208ENST00000508604 NPAS1Q99742 590 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 MMTAG2Q9BU76 263 aaKnown RBP2.98□□□□□ -1.93
NUP54-208ENST00000508604 HDHD5Q9BXW7 423 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 ADAM18Q9Y3Q7 739 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 A0A096LPK6 155 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 DDTLA6NHG4 134 aaPredicted RBP2.98□□□□□ -1.93
NUP54-208ENST00000508604 AGAP5A6NIR3 686 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 SLC38A8A6NNN8 435 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 DHRS4L1P0CG22 281 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 CETPP11597 493 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 NPPBP16860 134 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 PRPH2P23942 346 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 KLRK1P26718 216 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 SKIV2L2P42285 1042 aaKnown RBP2.98□□□□□ -1.93
NUP54-208ENST00000508604 LIFRP42702 1097 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 GPR12P47775 334 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 NLRP5P59047 1200 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 KRTAP10-3P60369 221 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 ADORA2A-AS1P86434 159 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 ECT2LQ008S8 904 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 SLC1A5Q15758 541 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 SLC35G1Q2M3R5 365 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 TBC1D22AQ8WUA7 517 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 PRPF18Q99633 342 aaKnown RBP2.98□□□□□ -1.93
NUP54-208ENST00000508604 MECRQ9BV79 373 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 DDX21Q9NR30 783 aaKnown RBP eCLIP2.98□□□□□ -1.93
NUP54-208ENST00000508604 TMEM51Q9NW97 253 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 PCDHA10Q9Y5I2 948 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 SMAD5-AS1Q9Y6J3 95 aa2.98□□□□□ -1.93
NUP54-208ENST00000508604 CHL1O00533 1208 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 KRTAP5-8O75690 187 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 FGF18O76093 207 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 IGHV4-30-4P0DP06 118 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 ATF3P18847 181 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 YWHAQP27348 245 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 DPP6P42658 865 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 CYP4A11Q02928 519 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 CDK18Q07002 472 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 DHX34Q14147 1143 aaKnown RBP2.97□□□□□ -1.93
NUP54-208ENST00000508604 PLEKHG6Q3KR16 790 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 GXYLT1Q4G148 440 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 AADACL2Q6P093 401 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 MTFR2Q6P444 385 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 SLC26A9Q7LBE3 791 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 OR1N1Q8NGS0 311 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 TTC8Q8TAM2 541 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 KCNJ9Q92806 393 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 TBCBQ99426 244 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 BARHL1Q9BZE3 327 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 NPFFR1Q9GZQ6 430 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 GFRA4Q9GZZ7 299 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 ZNF334Q9HCZ1 680 aaPredicted RBP2.97□□□□□ -1.93
NUP54-208ENST00000508604 DHDHQ9UQ10 334 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 OSGIN2Q9Y236 505 aa2.97□□□□□ -1.93
NUP54-208ENST00000508604 EFCAB8A8MWE9 144 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 SLC22A3O75751 556 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 GAGE7O76087 117 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 PMS2P2O95744 297 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 DDAH2O95865 285 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 GAGE12FP0CL80 117 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 GAGE12GP0CL81 117 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 GAGE12IP0CL82 117 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 HSD17B4P51659 736 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 ZNF132P52740 706 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 GAGE1Q13065 139 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 GAGE4Q13068 117 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 SYT16Q17RD7 645 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 C14orf177Q52M58 125 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 FAM209BQ5JX69 171 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 PLA2G4FQ68DD2 849 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 MARK2Q7KZI7 788 aaKnown RBP2.96□□□□□ -1.94
NUP54-208ENST00000508604 DPP9Q86TI2 863 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 SFR1Q86XK3 245 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 GATAD2AQ86YP4 633 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 GALNT15Q8N3T1 639 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 KCNH5Q8NCM2 988 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 GRAPLQ8TC17 118 aaPredicted RBP2.96□□□□□ -1.94
NUP54-208ENST00000508604 EBF2Q9HAK2 575 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 SMARCAL1Q9NZC9 954 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 VDAC3Q9Y277 283 aa2.96□□□□□ -1.94
NUP54-208ENST00000508604 GRM8O00222 908 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 PIP5K1BO14986 540 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 DNPH1O43598 174 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 ZNF883P0CG24 379 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 NOVP48745 357 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 RINLQ6ZS11 566 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 RNF144BQ7Z419 303 aa2.95□□□□□ -1.94
NUP54-208ENST00000508604 C14orf80Q86SX3 495 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms