RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 KIAA1161Q6NSJ0 714 aa16.83■□□□□ 0.28
VIM-208ENST00000497849 PTRH1Q86Y79 214 aaKnown RBP16.83■□□□□ 0.28
VIM-208ENST00000497849 GUF1Q8N442 669 aaKnown RBP16.83■□□□□ 0.28
VIM-208ENST00000497849 UNC13CQ8NB66 2214 aa16.83■□□□□ 0.28
VIM-208ENST00000497849 GLMNQ92990 594 aa16.83■□□□□ 0.28
VIM-208ENST00000497849 RNF34Q969K3 372 aa16.83■□□□□ 0.28
VIM-208ENST00000497849 SPATA32Q96LK8 384 aa16.83■□□□□ 0.28
VIM-208ENST00000497849 RPRD1AQ96P16 312 aaPredicted RBP16.83■□□□□ 0.28
VIM-208ENST00000497849 PSMB7Q99436 277 aa16.83■□□□□ 0.28
VIM-208ENST00000497849 TEP1Q99973 2627 aaKnown RBP16.83■□□□□ 0.28
VIM-208ENST00000497849 FOXP3Q9BZS1 431 aa16.83■□□□□ 0.28
VIM-208ENST00000497849 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.83■□□□□ 0.28
VIM-208ENST00000497849 SPASTQ9UBP0 616 aa16.83■□□□□ 0.28
VIM-208ENST00000497849 PADI4Q9UM07 663 aa16.83■□□□□ 0.28
VIM-208ENST00000497849 MAN2B2Q9Y2E5 1009 aa16.83■□□□□ 0.28
VIM-208ENST00000497849 FARP1Q9Y4F1 1045 aaPredicted RBP16.83■□□□□ 0.28
VIM-208ENST00000497849 LMO7DNF2Z398 122 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 NVLO15381 856 aaKnown RBP16.82■□□□□ 0.28
VIM-208ENST00000497849 SNAP91O60641 907 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 MYL1P05976 194 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 PRR29P0C7W0 189 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 RRM1P23921 792 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 PFN3P60673 137 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 FOXK1P85037 733 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 SERINC3Q13530 473 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 IGFBP7Q16270 282 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 SKIDA1Q1XH10 827 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 PRRT3Q5FWE3 981 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 ATP11CQ8NB49 1132 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 GRIN3AQ8TCU5 1115 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 BTN2A2Q8WVV5 523 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 PSMG3-AS1Q96PY0 264 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 LRRC61Q9BV99 259 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 CLPBQ9H078 707 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 PISDQ9UG56 409 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 APOBEC3BQ9UH17 382 aaKnown RBP16.82■□□□□ 0.28
VIM-208ENST00000497849 TBC1D30Q9Y2I9 924 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 FADS3Q9Y5Q0 445 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 WASF2Q9Y6W5 498 aa16.82■□□□□ 0.28
VIM-208ENST00000497849 A0A1W2PQM1 296 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 D6RAR5 112 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 FPGTO14772 594 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 YY2O15391 372 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 SART1O43290 800 aaKnown RBP16.81■□□□□ 0.28
VIM-208ENST00000497849 LEFTY1O75610 366 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 ADRB3P13945 408 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 TBXAS1P24557 533 aaPredicted RBP16.81■□□□□ 0.28
VIM-208ENST00000497849 GPD2P43304 727 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 NEK3P51956 506 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 AUHQ13825 339 aaKnown RBP16.81■□□□□ 0.28
VIM-208ENST00000497849 MORC3Q14149 939 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 STILQ15468 1287 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 EDRF1Q3B7T1 1238 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 C4orf17Q53FE4 359 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 ZFAND4Q86XD8 727 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 DTX1Q86Y01 620 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 ZNF564Q8TBZ8 553 aaPredicted RBP16.81■□□□□ 0.28
VIM-208ENST00000497849 FEM1CQ96JP0 617 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 CCDC114Q96M63 670 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 LENG8Q96PV6 779 aaPredicted RBP16.81■□□□□ 0.28
VIM-208ENST00000497849 C1QTNF2Q9BXJ5 285 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 STRADBQ9C0K7 418 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 POPDC2Q9HBU9 364 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 ST7Q9NRC1 585 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 SEPT10Q9P0V9 454 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 IL36AQ9UHA7 158 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 SLC12A6Q9UHW9 1150 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 VPS51Q9UID3 782 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 VANGL2Q9ULK5 521 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 PCDHB4Q9Y5E5 795 aa16.81■□□□□ 0.28
VIM-208ENST00000497849 ICE1Q9Y2F5 2266 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 PRAMEF33A0A0G2JMD5 474 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 TMX2-CTNND1H3BSU7 103 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 PRAMEF10O60809 474 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 ZNF821O75541 412 aaPredicted RBP16.8■□□□□ 0.28
VIM-208ENST00000497849 ANXA6P08133 673 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 CELA2BP08218 269 aaPredicted RBP16.8■□□□□ 0.28
VIM-208ENST00000497849 EPB41P11171 864 aaKnown RBP16.8■□□□□ 0.28
VIM-208ENST00000497849 TSHRP16473 764 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 ITIH1P19827 911 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 CCKBRP32239 447 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 GGCXP38435 758 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 CCL7P80098 99 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 DCAF17Q5H9S7 520 aaPredicted RBP16.8■□□□□ 0.28
VIM-208ENST00000497849 TCERG1LQ5VWI1 586 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 ESRP1Q6NXG1 681 aaKnown RBP16.8■□□□□ 0.28
VIM-208ENST00000497849 DPY19L3Q6ZPD9 716 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 PHACTR4Q8IZ21 702 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 ZSCAN1Q8NBB4 408 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 KAT5Q92993 513 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 CCDC74AQ96AQ1 378 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 TBATAQ96M53 351 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 GFM1Q96RP9 751 aaKnown RBP16.8■□□□□ 0.28
VIM-208ENST00000497849 MUC3BQ9H195 1237 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 TNKS2Q9H2K2 1166 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 FOXJ2Q9P0K8 574 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 LOXL2Q9Y4K0 774 aa16.8■□□□□ 0.28
VIM-208ENST00000497849 SPENQ96T58 3664 aaKnown RBP16.8■□□□□ 0.28
VIM-208ENST00000497849 IGLON5A6NGN9 336 aa16.79■□□□□ 0.28
VIM-208ENST00000497849 CLDN11O75508 207 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms