RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 PGFP49763 221 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 RENBPP51606 427 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 NDST2P52849 883 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 COPAP53621 1224 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 TBX4P57082 545 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 HNRNPDQ14103 355 aaKnown RBP11.23□□□□□ -0.61
CMSS1-208ENST00000496116 DENND5AQ6IQ26 1287 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 MSANTD2Q6P1R3 559 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 ZYG11AQ6WRX3 759 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 MAVSQ7Z434 540 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 COLGALT2Q8IYK4 626 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 ULK2Q8IYT8 1036 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 ZNF781Q8N8C0 355 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 MAB21L3Q8N8X9 362 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 TDRD5Q8NAT2 981 aaKnown RBP11.23□□□□□ -0.61
CMSS1-208ENST00000496116 WDR60Q8WVS4 1066 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 ZNF419Q96HQ0 510 aaPredicted RBP11.23□□□□□ -0.61
CMSS1-208ENST00000496116 SCYL1Q96KG9 808 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 FAM167BQ9BTA0 163 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 ILKAPQ9H0C8 392 aaPredicted RBP11.23□□□□□ -0.61
CMSS1-208ENST00000496116 COG4Q9H9E3 785 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 CPSF2Q9P2I0 782 aaKnown RBP11.23□□□□□ -0.61
CMSS1-208ENST00000496116 ACOT9Q9Y305 439 aa11.23□□□□□ -0.61
CMSS1-208ENST00000496116 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.23□□□□□ -0.61
CMSS1-208ENST00000496116 SYN3O14994 580 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 TADA2AO75478 443 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 RHOQP17081 205 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 NCF2P19878 526 aaPredicted RBP11.22□□□□□ -0.61
CMSS1-208ENST00000496116 CRABP2P29373 138 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 ARCN1P48444 511 aaKnown RBP11.22□□□□□ -0.61
CMSS1-208ENST00000496116 CENPFP49454 3210 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 KPNA2P52292 529 aaKnown RBP11.22□□□□□ -0.61
CMSS1-208ENST00000496116 RAB10P61026 200 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 SLC34A1Q06495 639 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 ASPHQ12797 758 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 DDR2Q16832 855 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 METTL21CQ5VZV1 264 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 KIAA0930Q6ICG6 404 aaPredicted RBP11.22□□□□□ -0.61
CMSS1-208ENST00000496116 ESRP1Q6NXG1 681 aaKnown RBP11.22□□□□□ -0.61
CMSS1-208ENST00000496116 EPGNQ6UW88 154 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 RANBP10Q6VN20 620 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 NAPRTQ6XQN6 538 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 ATG14Q6ZNE5 492 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 C14orf80Q86SX3 495 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 UMODL1-AS1Q8N2C9 162 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 ATP6V0D2Q8N8Y2 350 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 ACVR1CQ8NER5 493 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 FBXO27Q8NI29 283 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 SLC39A13Q96H72 371 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 MRGPRX2Q96LB1 330 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 GLT1D1Q96MS3 346 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 C1QTNF1Q9BXJ1 281 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 ZYG11BQ9C0D3 744 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 SLC25A51Q9H1U9 297 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 OSER1Q9NX31 292 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 STX18Q9P2W9 335 aaKnown RBP11.22□□□□□ -0.61
CMSS1-208ENST00000496116 RUVBL2Q9Y230 463 aaKnown RBP11.22□□□□□ -0.61
CMSS1-208ENST00000496116 PCDHB5Q9Y5E4 795 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 FRMPD3Q5JV73 1810 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 PLXNA3P51805 1871 aa11.22□□□□□ -0.61
CMSS1-208ENST00000496116 FAM95CA0A1B0GW59 222 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 HEATR9A2RTY3 570 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 TK2O00142 265 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 PHGDHO43175 533 aaKnown RBP11.21□□□□□ -0.61
CMSS1-208ENST00000496116 KRT36O76013 467 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 SLC35E2BP0CK96 405 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 CD151P48509 253 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 ACLYP53396 1101 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 SLC12A2P55011 1212 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 SESN3P58005 492 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 USP4Q13107 963 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 CTBP1Q13363 440 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 MUM1Q2TAK8 710 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 CMPK2Q5EBM0 449 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 CLLU1OSQ5K130 101 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 PIK3R6Q5UE93 754 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 RTN4RL1Q86UN2 441 aaPredicted RBP11.21□□□□□ -0.61
CMSS1-208ENST00000496116 DENND6AQ8IWF6 608 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 PPFIBP2Q8ND30 876 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 CALML6Q8TD86 181 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 FATE1Q969F0 183 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 GATA5Q9BWX5 397 aaPredicted RBP11.21□□□□□ -0.61
CMSS1-208ENST00000496116 DRC3Q9H069 523 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 VPS45Q9NRW7 570 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 TREX1Q9NSU2 369 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 OLA1Q9NTK5 396 aaKnown RBP11.21□□□□□ -0.61
CMSS1-208ENST00000496116 ABT1Q9ULW3 272 aaKnown RBP11.21□□□□□ -0.61
CMSS1-208ENST00000496116 PRG3Q9Y2Y8 225 aaPredicted RBP11.21□□□□□ -0.61
CMSS1-208ENST00000496116 RAP2CQ9Y3L5 183 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 TTC3P53804 2025 aa11.21□□□□□ -0.61
CMSS1-208ENST00000496116 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.21□□□□□ -0.62
CMSS1-208ENST00000496116 B4GALT3O60512 393 aa11.21□□□□□ -0.62
CMSS1-208ENST00000496116 ELNP15502 786 aa11.21□□□□□ -0.62
CMSS1-208ENST00000496116 GABRB3P28472 473 aa11.21□□□□□ -0.62
CMSS1-208ENST00000496116 PRDX6P30041 224 aa11.21□□□□□ -0.62
CMSS1-208ENST00000496116 AVPR1AP37288 418 aa11.21□□□□□ -0.62
CMSS1-208ENST00000496116 SLC1A2P43004 574 aa11.21□□□□□ -0.62
CMSS1-208ENST00000496116 MAGEA11P43364 429 aa11.21□□□□□ -0.62
CMSS1-208ENST00000496116 GRIA4P48058 902 aa11.21□□□□□ -0.62
CMSS1-208ENST00000496116 PSEN1P49768 467 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms