RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 SLC45A3Q96JT2 553 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 DCUN1D5Q9BTE7 237 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 ADI1Q9BV57 179 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 DHX35Q9H5Z1 703 aaKnown RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 NOL11Q9H8H0 719 aaKnown RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 CCM2LQ9NUG4 571 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 SMOXQ9NWM0 555 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 GID8Q9NWU2 228 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 GIN1Q9NXP7 522 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 PGAP2Q9UHJ9 254 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 AP4E1Q9UPM8 1137 aa9.82□□□□□ -0.84
SYNE1-230ENST00000495090 FAM32AQ9Y421 112 aaKnown RBP9.82□□□□□ -0.84
SYNE1-230ENST00000495090 PARP14Q460N5 1801 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 AQP12BA6NM10 295 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 KCNU1A8MYU2 1149 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 K7EPI3 171 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 TK2O00142 265 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 SOCS2O14508 198 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 NOL3O60936 208 aaKnown RBP9.81□□□□□ -0.84
SYNE1-230ENST00000495090 ADAM23O75077 832 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 GRAP2O75791 330 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 CPNE6O95741 557 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 CYP2C9P11712 490 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 NELFEP18615 380 aaKnown RBP9.81□□□□□ -0.84
SYNE1-230ENST00000495090 FGFR3P22607 806 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 HMGB2P26583 209 aaKnown RBP9.81□□□□□ -0.84
SYNE1-230ENST00000495090 PSMB4P28070 264 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 NAGLUP54802 743 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 TMBIM6P55061 237 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 RPS3AP61247 264 aaKnown RBP9.81□□□□□ -0.84
SYNE1-230ENST00000495090 MERTKQ12866 999 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 RAB39AQ14964 217 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 RGS21Q2M5E4 152 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 HSDL1Q3SXM5 330 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 AARS2Q5JTZ9 985 aaKnown RBP9.81□□□□□ -0.84
SYNE1-230ENST00000495090 TREML2Q5T2D2 321 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 ANKRD26P1Q6NSI1 321 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 C16orf87Q6PH81 154 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 PIWIL4Q7Z3Z4 852 aaKnown RBP9.81□□□□□ -0.84
SYNE1-230ENST00000495090 DHFR2Q86XF0 187 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 AQP12AQ8IXF9 295 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 SLC15A3Q8IY34 581 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 EXOC8Q8IYI6 725 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 SCAIQ8N9R8 606 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 ADAM32Q8TC27 787 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 SEPT8Q92599 483 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 ZNF669Q96BR6 464 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-230ENST00000495090 P2RY11Q96G91 374 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 VPS39Q96JC1 886 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 KCTD15Q96SI1 283 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-230ENST00000495090 C9orf16Q9BUW7 83 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 C1orf50Q9BV19 199 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 SLC25A23Q9BV35 468 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 TRIM15Q9C019 465 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 UNKQ9C0B0 810 aaKnown RBP9.81□□□□□ -0.84
SYNE1-230ENST00000495090 PCDHAC1Q9H158 963 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 TASP1Q9H6P5 420 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 RPF1Q9H9Y2 349 aaKnown RBP9.81□□□□□ -0.84
SYNE1-230ENST00000495090 BFARQ9NZS9 450 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 KIAA1522Q9P206 1035 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-230ENST00000495090 SEPT3Q9UH03 358 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 TLK1Q9UKI8 766 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 ERGIC3Q9Y282 383 aa9.81□□□□□ -0.84
SYNE1-230ENST00000495090 E2F8A0AVK6 867 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ERI2A8K979 691 aaKnown RBP9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ACKR2O00590 384 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 AP2A1O95782 977 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 JUNP05412 331 aaKnown RBP9.8□□□□□ -0.84
SYNE1-230ENST00000495090 TFPTP0C1Z6 253 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ARL4AP40617 200 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ATP4BP51164 291 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 BMXP51813 675 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 DNAJB13P59910 316 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 PMS2P3Q13401 168 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 SLC12A1Q13621 1099 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ITGA7Q13683 1181 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 DLG2Q15700 870 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 SPATS1Q496A3 300 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ATF7IP2Q5U623 682 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 MAP1SQ66K74 1059 aaPredicted RBP9.8□□□□□ -0.84
SYNE1-230ENST00000495090 FAM117BQ6P1L5 589 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ABRAXAS1Q6UWZ7 409 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 GK5Q6ZS86 529 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ERO1BQ86YB8 467 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ANKRD13AQ8IZ07 590 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 SIX6OS1Q8N1H7 587 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 NLGN1Q8N2Q7 840 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 PPWD1Q96BP3 646 aaKnown RBP9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ROPN1LQ96C74 230 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 PPP1R10Q96QC0 940 aaKnown RBP9.8□□□□□ -0.84
SYNE1-230ENST00000495090 NT5C1AQ9BXI3 368 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 SNX25Q9H3E2 840 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 CASS4Q9NQ75 786 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ANLNQ9NQW6 1124 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 VANGL2Q9ULK5 521 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 RIPK3Q9Y572 518 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 A0A1W2PPW3 197 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 SRP72O76094 671 aaKnown RBP9.8□□□□□ -0.84
SYNE1-230ENST00000495090 ITGB3P05106 788 aa9.8□□□□□ -0.84
SYNE1-230ENST00000495090 EIF2S1P05198 315 aaKnown RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms