RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 ATP2A3Q93084 1043 aa12.87□□□□□ -0.35
VPS52-220ENST00000493674 BHMTQ93088 406 aa12.87□□□□□ -0.35
VPS52-220ENST00000493674 SERPINB12Q96P63 405 aa12.87□□□□□ -0.35
VPS52-220ENST00000493674 WDR83Q9BRX9 315 aaKnown RBP12.87□□□□□ -0.35
VPS52-220ENST00000493674 SPON2Q9BUD6 331 aa12.87□□□□□ -0.35
VPS52-220ENST00000493674 C2orf49Q9BVC5 232 aaPredicted RBP12.87□□□□□ -0.35
VPS52-220ENST00000493674 XAB2Q9HCS7 855 aaKnown RBP12.87□□□□□ -0.35
VPS52-220ENST00000493674 SEPT3Q9UH03 358 aa12.87□□□□□ -0.35
VPS52-220ENST00000493674 VPS28Q9UK41 221 aa12.87□□□□□ -0.35
VPS52-220ENST00000493674 HPCAL4Q9UM19 191 aa12.87□□□□□ -0.35
VPS52-220ENST00000493674 FAM50BQ9Y247 325 aa12.87□□□□□ -0.35
VPS52-220ENST00000493674 SLC27A6Q9Y2P4 619 aa12.87□□□□□ -0.35
VPS52-220ENST00000493674 BDP1A6H8Y1 2624 aa12.87□□□□□ -0.35
VPS52-220ENST00000493674 CBX4O00257 560 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 ALOX15BO15296 676 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 ATP8B1O43520 1251 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 CISD3P0C7P0 127 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 PABPC1P11940 636 aaKnown RBP12.86□□□□□ -0.35
VPS52-220ENST00000493674 GBP2P32456 591 aaPredicted RBP12.86□□□□□ -0.35
VPS52-220ENST00000493674 ADRA1AP35348 466 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 VASPP50552 380 aaPredicted RBP12.86□□□□□ -0.35
VPS52-220ENST00000493674 ARL4CP56559 192 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 GEMIN4P57678 1058 aaKnown RBP12.86□□□□□ -0.35
VPS52-220ENST00000493674 NIPAL4Q0D2K0 466 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 CASP8Q14790 479 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 CYTH1Q15438 398 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 FUT11Q495W5 492 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 MSS51Q4VC12 460 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 TJAP1Q5JTD0 557 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 FNBP1LQ5T0N5 605 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 PARM1Q6UWI2 310 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 MTSS1LQ765P7 747 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 PRPF39Q86UA1 669 aaKnown RBP12.86□□□□□ -0.35
VPS52-220ENST00000493674 CCDC117Q8IWD4 279 aaPredicted RBP12.86□□□□□ -0.35
VPS52-220ENST00000493674 AGGF1Q8N302 714 aaeCLIP12.86□□□□□ -0.35
VPS52-220ENST00000493674 PDCD7Q8N8D1 485 aaKnown RBP12.86□□□□□ -0.35
VPS52-220ENST00000493674 ZFYVE19Q96K21 471 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 GDAP1L1Q96MZ0 367 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 RBM15Q96T37 977 aaKnown RBP eCLIP12.86□□□□□ -0.35
VPS52-220ENST00000493674 VIPAS39Q9H9C1 493 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 NT5MQ9NPB1 228 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 VPS45Q9NRW7 570 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 ABCB8Q9NUT2 735 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 THG1LQ9NWX6 298 aaKnown RBP12.86□□□□□ -0.35
VPS52-220ENST00000493674 LHX3Q9UBR4 397 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 GGA2Q9UJY4 613 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 ACTL7AQ9Y615 435 aa12.86□□□□□ -0.35
VPS52-220ENST00000493674 OTOL1A6NHN0 477 aaPredicted RBP12.85□□□□□ -0.35
VPS52-220ENST00000493674 PSMD3O43242 534 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 MBTPS2O43462 519 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 SASH3O75995 380 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 ANXA9O76027 345 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 TMCC1O94876 653 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 PSMC3P17980 439 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 KCNA5P22460 613 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 HSD17B3P37058 310 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 SERPINH1P50454 418 aaKnown RBP12.85□□□□□ -0.35
VPS52-220ENST00000493674 PMS2P54278 862 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 GEMP55040 296 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 SLC20A2Q08357 652 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 MPP3Q13368 585 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 ZNF235Q14590 738 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 RETSATQ6NUM9 610 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 LRRC8BQ6P9F7 803 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 TRMT10CQ7L0Y3 403 aaKnown RBP12.85□□□□□ -0.35
VPS52-220ENST00000493674 METTL3Q86U44 580 aaKnown RBP12.85□□□□□ -0.35
VPS52-220ENST00000493674 ADIPOR2Q86V24 386 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 C12orf40Q86WS4 652 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 ZNF354CQ86Y25 554 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 PHTF2Q8N3S3 785 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 SPATA22Q8NHS9 363 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 TTC17Q96AE7 1141 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 CHFRQ96EP1 664 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 ASB2Q96Q27 587 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 KXD1Q9BQD3 176 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 POLR1EQ9GZS1 481 aaKnown RBP12.85□□□□□ -0.35
VPS52-220ENST00000493674 PABPC3Q9H361 631 aaKnown RBP12.85□□□□□ -0.35
VPS52-220ENST00000493674 CDC42EP4Q9H3Q1 356 aaKnown RBP12.85□□□□□ -0.35
VPS52-220ENST00000493674 EBF3Q9H4W6 596 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 ECT2Q9H8V3 914 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 LRRC40Q9H9A6 602 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 CASS4Q9NQ75 786 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 PRDM6Q9NQX0 595 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 HS3ST2Q9Y278 367 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 AAR2Q9Y312 384 aaKnown RBP12.85□□□□□ -0.35
VPS52-220ENST00000493674 TEX264Q9Y6I9 313 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 PLXNB3Q9ULL4 1909 aa12.85□□□□□ -0.35
VPS52-220ENST00000493674 F5P12259 2224 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 GOLGA6CA6NDK9 693 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 GOLGA6BA6NDN3 693 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 E7EVH7 732 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 F5H423 210 aaPredicted RBP12.84□□□□□ -0.35
VPS52-220ENST00000493674 H3BQ06 376 aaPredicted RBP12.84□□□□□ -0.35
VPS52-220ENST00000493674 GOLGA8MH3BSY2 632 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 TULP3O75386 442 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 ZNF821O75541 412 aaPredicted RBP12.84□□□□□ -0.35
VPS52-220ENST00000493674 MT-CYBP00156 380 aaPredicted RBP12.84□□□□□ -0.35
VPS52-220ENST00000493674 GOLGA6DP0CG33 693 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 CES1P23141 567 aa12.84□□□□□ -0.35
VPS52-220ENST00000493674 GRIA1P42261 906 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms