RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PIK3CAP42336 1068 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 PIP4K2AP48426 406 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-212ENST00000493341 ADPRHP54922 357 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 MFSD13AQ14CX5 517 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 ADIPOQQ15848 244 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 ZNF805Q5CZA5 627 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 ZNF628Q5EBL2 1059 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 FAM171A1Q5VUB5 890 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 KRT80Q6KB66 452 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 ARMC6Q6NXE6 501 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 RHPN2Q8IUC4 686 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 CCDC170Q8IYT3 715 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 SYT8Q8NBV8 401 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 PIGOQ8TEQ8 1089 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 RFKQ969G6 155 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 FAM89AQ96GI7 184 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 HGH1Q9BTY7 390 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 IFIH1Q9BYX4 1025 aaKnown RBP4.89□□□□□ -1.63
VPS13A-212ENST00000493341 NUF2Q9BZD4 464 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 TRIM2Q9C040 744 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 KIF9Q9HAQ2 790 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 CD248Q9HCU0 757 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 SLC6A13Q9NSD5 602 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 MARCH4Q9P2E8 410 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-212ENST00000493341 FBXO4Q9UKT5 387 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 FZD4Q9ULV1 537 aa4.89□□□□□ -1.63
VPS13A-212ENST00000493341 CHL1O00533 1208 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 SPDEFO95238 335 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 BAG2O95816 211 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 SERPINC1P01008 464 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 ABCB1P08183 1280 aaPredicted RBP4.88□□□□□ -1.63
VPS13A-212ENST00000493341 ADH4P08319 380 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 CCDC175P0C221 793 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 SLC2A4P14672 509 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 SFPQP23246 707 aaKnown RBP eCLIP4.88□□□□□ -1.63
VPS13A-212ENST00000493341 ATP5DP30049 168 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 TLX1P31314 330 aaPredicted RBP4.88□□□□□ -1.63
VPS13A-212ENST00000493341 CNR2P34972 360 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 CFHR3Q02985 330 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 DDR1Q08345 913 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 ALG11Q2TAA5 492 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 TBC1D25Q3MII6 688 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 SLC2A7Q6PXP3 512 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 GLDNQ6ZMI3 551 aaPredicted RBP4.88□□□□□ -1.63
VPS13A-212ENST00000493341 LIMS2Q7Z4I7 341 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 CIR1Q86X95 450 aaPredicted RBP4.88□□□□□ -1.63
VPS13A-212ENST00000493341 METTL23Q86XA0 190 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 GDPD5Q8WTR4 605 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 DEPDC1BQ8WUY9 529 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 TFAP2BQ92481 460 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 PABPC5Q96DU9 382 aaKnown RBP4.88□□□□□ -1.63
VPS13A-212ENST00000493341 PAFAH2Q99487 392 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 DUSP22Q9NRW4 184 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 OGFRQ9NZT2 677 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 CNOT8Q9UFF9 292 aaKnown RBP4.88□□□□□ -1.63
VPS13A-212ENST00000493341 TESQ9UGI8 421 aaKnown RBP4.88□□□□□ -1.63
VPS13A-212ENST00000493341 ACAD8Q9UKU7 415 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 PADI1Q9ULC6 663 aa4.88□□□□□ -1.63
VPS13A-212ENST00000493341 TARSL2A2RTX5 802 aaKnown RBP4.87□□□□□ -1.63
VPS13A-212ENST00000493341 CLIC1O00299 241 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 HS6ST1O60243 411 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 TPPPO94811 219 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 IL1AP01583 271 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 IRF1P10914 325 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 CAMPP49913 170 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 BLKP51451 505 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 FGFBP1Q14512 234 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 ASTE1Q2TB18 679 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-212ENST00000493341 COL28A1Q2UY09 1125 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 IGSF11Q5DX21 431 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 JADE1Q6IE81 842 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 CAVIN1Q6NZI2 390 aaKnown RBP4.87□□□□□ -1.63
VPS13A-212ENST00000493341 AADACL2Q6P093 401 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 Q6ZSN1 163 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 MDGA2Q7Z553 956 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 NEK8Q86SG6 692 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 TDRPQ86YL5 185 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 NDUFAF2Q8N183 169 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 AMER2Q8N7J2 671 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 GDAP1Q8TB36 358 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 ZNF845Q96IR2 970 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-212ENST00000493341 HIC2Q96JB3 615 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 RNF26Q9BY78 433 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-212ENST00000493341 ARHGEF38Q9NXL2 777 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 PLK2Q9NYY3 685 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 REXO2Q9Y3B8 237 aaKnown RBP4.87□□□□□ -1.63
VPS13A-212ENST00000493341 A0A1W2PRG0 241 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 QSOX1O00391 747 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 PROM1O43490 865 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 NPSP0C0P6 89 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 RFPL3SP0C7P2 107 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 IL7RP16871 459 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 ATP5F1P24539 256 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-212ENST00000493341 GP5P40197 560 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 TP53BP2Q13625 1128 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 SNTB1Q13884 538 aaKnown RBP4.87□□□□□ -1.63
VPS13A-212ENST00000493341 RNASE12Q5GAN4 147 aaKnown RBP4.87□□□□□ -1.63
VPS13A-212ENST00000493341 PLAC9Q5JTB6 97 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 TXNDC8Q6A555 127 aa4.87□□□□□ -1.63
VPS13A-212ENST00000493341 PET117Q6UWS5 81 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms