RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 BROXQ5VW32 411 aa13.48□□□□□ -0.25
HDAC3-213ENST00000492506 FMR1NBQ8N0W7 255 aaPredicted RBP13.48□□□□□ -0.25
HDAC3-213ENST00000492506 LSMEM2Q8N112 164 aa13.48□□□□□ -0.25
HDAC3-213ENST00000492506 GUF1Q8N442 669 aaKnown RBP13.48□□□□□ -0.25
HDAC3-213ENST00000492506 TMEM145Q8NBT3 493 aa13.48□□□□□ -0.25
HDAC3-213ENST00000492506 DQX1Q8TE96 717 aaKnown RBP13.48□□□□□ -0.25
HDAC3-213ENST00000492506 DDX50Q9BQ39 737 aaKnown RBP13.48□□□□□ -0.25
HDAC3-213ENST00000492506 ETAA1Q9NY74 926 aa13.48□□□□□ -0.25
HDAC3-213ENST00000492506 KIAA1257Q9ULG3 409 aa13.48□□□□□ -0.25
HDAC3-213ENST00000492506 TLR6Q9Y2C9 796 aa13.48□□□□□ -0.25
HDAC3-213ENST00000492506 U3KQA8 63 aa13.48□□□□□ -0.25
HDAC3-213ENST00000492506 A0A1B0GVL5 298 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 A0A1W2PNU3 283 aaPredicted RBP13.47□□□□□ -0.25
HDAC3-213ENST00000492506 TYW5A2RUC4 315 aaKnown RBP13.47□□□□□ -0.25
HDAC3-213ENST00000492506 PRAMEF26H0Y7S4 382 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 LZTS3O60299 673 aaPredicted RBP13.47□□□□□ -0.25
HDAC3-213ENST00000492506 USP12O75317 370 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 NEBLO76041 1014 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 IPO7O95373 1038 aaKnown RBP13.47□□□□□ -0.25
HDAC3-213ENST00000492506 MOCS3O95396 460 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 SERPINC1P01008 464 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 MYF5P13349 255 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 PFKFB1P16118 471 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 NUMBP49757 651 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 TAS2R38P59533 333 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 DAB2P98082 770 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 VAC14Q08AM6 782 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 CNTN1Q12860 1018 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 TBX2Q13207 712 aaPredicted RBP13.47□□□□□ -0.25
HDAC3-213ENST00000492506 NNTQ13423 1086 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 BIRC2Q13490 618 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 STIM1Q13586 685 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 IGF2-ASQ6U949 168 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 KCNE4Q8WWG9 221 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 KLHDC7BQ96G42 594 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 DEPDC7Q96QD5 511 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 SPAG5Q96R06 1193 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 DPH1Q9BZG8 443 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 POLR1BQ9H9Y6 1135 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 KLHL11Q9NVR0 708 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 PPM1HQ9ULR3 514 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 HPSEQ9Y251 543 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 CAPN7Q9Y6W3 813 aa13.47□□□□□ -0.25
HDAC3-213ENST00000492506 FLNCQ14315 2725 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 GOLGA6CA6NDK9 693 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 RNF225M0QZC1 329 aaPredicted RBP13.46□□□□□ -0.25
HDAC3-213ENST00000492506 FFAR2O15552 330 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 KLK10O43240 276 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 CSO75390 466 aaKnown RBP13.46□□□□□ -0.25
HDAC3-213ENST00000492506 PIAS2O75928 621 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 GOLGA6DP0CG33 693 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 EPB41P11171 864 aaKnown RBP13.46□□□□□ -0.25
HDAC3-213ENST00000492506 CCT5P48643 541 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 FNTAP49354 379 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 VASPP50552 380 aaPredicted RBP13.46□□□□□ -0.25
HDAC3-213ENST00000492506 IRAK1P51617 712 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 PLK1P53350 603 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 KCNMA1Q12791 1236 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 DPYDQ12882 1025 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 EDRF1Q3B7T1 1238 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 POM121L1PQ3SYA9 428 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 SETMARQ53H47 684 aaPredicted RBP13.46□□□□□ -0.25
HDAC3-213ENST00000492506 CEP85LQ5SZL2 805 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 RNF219Q5W0B1 726 aaPredicted RBP13.46□□□□□ -0.25
HDAC3-213ENST00000492506 ISM2Q6H9L7 571 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 TMEM139Q8IV31 216 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 LGI2Q8N0V4 545 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 RSRC1Q96IZ7 334 aaKnown RBP13.46□□□□□ -0.25
HDAC3-213ENST00000492506 APOLD1Q96LR9 279 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 SERPINB11Q96P15 392 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 NAPGQ99747 312 aaPredicted RBP13.46□□□□□ -0.25
HDAC3-213ENST00000492506 CAPS2Q9BXY5 557 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 GOLGA6AQ9NYA3 693 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 CPSF2Q9P2I0 782 aaKnown RBP13.46□□□□□ -0.25
HDAC3-213ENST00000492506 HOOK1Q9UJC3 728 aaKnown RBP13.46□□□□□ -0.25
HDAC3-213ENST00000492506 NAALADL1Q9UQQ1 740 aa13.46□□□□□ -0.25
HDAC3-213ENST00000492506 LIN7AO14910 233 aaPredicted RBP13.45□□□□□ -0.26
HDAC3-213ENST00000492506 RNGTTO60942 597 aaKnown RBP13.45□□□□□ -0.26
HDAC3-213ENST00000492506 MOCS2O96007 188 aaPredicted RBP13.45□□□□□ -0.26
HDAC3-213ENST00000492506 CALCAP01258 141 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 GP1BAP07359 652 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 PAEPP09466 180 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 THEGLP0DJG4 465 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 TACR2P21452 398 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 CMA1P23946 247 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 RPL34P49207 117 aaKnown RBP13.45□□□□□ -0.26
HDAC3-213ENST00000492506 KCNC4Q03721 635 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 SLC12A1Q13621 1099 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 NCAPHQ15003 741 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 SNCBQ16143 134 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 CNGA2Q16280 664 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 CCDC38Q502W7 563 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 SYPL2Q5VXT5 272 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 RAP1GAP2Q684P5 730 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 CXorf57Q6NSI4 855 aaKnown RBP13.45□□□□□ -0.26
HDAC3-213ENST00000492506 TAC4Q86UU9 113 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 CCDC117Q8IWD4 279 aaPredicted RBP13.45□□□□□ -0.26
HDAC3-213ENST00000492506 COG1Q8WTW3 980 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 ALG14Q96F25 216 aa13.45□□□□□ -0.26
HDAC3-213ENST00000492506 MED8Q96G25 268 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms