RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 TAGLN3Q9UI15 199 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 FBXO4Q9UKT5 387 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 DAPP1Q9UN19 280 aa2.38□□□□□ -2.03
HMGB1-208ENST00000490788 BRD4O60885 1362 aaPredicted RBP2.37□□□□□ -2.03
HMGB1-208ENST00000490788 CEP152O94986 1710 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 LTBP1Q14766 1721 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 KIAA1107Q9UPP5 1409 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 A0A0G2JLW4 131 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 RPS10-NUDT3A0A1W2PQS6 291 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 FAM90A18PA6NE21 464 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 GAGE12JA6NER3 117 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 FAM90A16PA6NEW6 464 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 FAM90A9PA6NNJ1 464 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 FAM90A5PA8MXJ8 464 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 ZNF814B7Z6K7 855 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 SYN3O14994 580 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 STRNO43815 780 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 KRT38O76015 456 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 FAM90A15PP0C7V4 464 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 FAM90A14PP0C7W9 464 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 T-ENOLP0DO92 83 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 CHRNB1P11230 501 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 PKMP14618 531 aaKnown RBP2.37□□□□□ -2.03
HMGB1-208ENST00000490788 TKTP29401 623 aaKnown RBP2.37□□□□□ -2.03
HMGB1-208ENST00000490788 CHKAP35790 457 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 SLC16A2P36021 539 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 CDKN2AP42771 156 aaKnown RBP2.37□□□□□ -2.03
HMGB1-208ENST00000490788 AARSP49588 968 aaKnown RBP eCLIP2.37□□□□□ -2.03
HMGB1-208ENST00000490788 MCM2P49736 904 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 CDK7P50613 346 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 FAM3BP58499 235 aaPredicted RBP2.37□□□□□ -2.03
HMGB1-208ENST00000490788 RHBDL3P58872 404 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 CDK18Q07002 472 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 PRKG1Q13976 671 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 ADCK5Q3MIX3 580 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 GXYLT1Q4G148 440 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 KIAA1755Q5JYT7 1200 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 FAM171A1Q5VUB5 890 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 TTLL5Q6EMB2 1281 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 DGAT2L7PQ6IED9 249 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 ZNF549Q6P9A3 640 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 CCDC174Q6PII3 467 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 SLC30A9Q6PML9 568 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 MDGA2Q7Z553 956 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 PIP4P1Q86T03 277 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 PALB2Q86YC2 1186 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 VPS52Q8N1B4 723 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 SLC25A41Q8N5S1 370 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 OR6Y1Q8NGX8 325 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 SCAMP5Q8TAC9 235 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 IP6K1Q92551 441 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 ATP2A3Q93084 1043 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 ARRDC3Q96B67 414 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 THOC3Q96J01 351 aaKnown RBP2.37□□□□□ -2.03
HMGB1-208ENST00000490788 RPS6KC1Q96S38 1066 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 FAM167BQ9BTA0 163 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 LDHAL6BQ9BYZ2 381 aaPredicted RBP2.37□□□□□ -2.03
HMGB1-208ENST00000490788 ACTR5Q9H9F9 607 aaPredicted RBP2.37□□□□□ -2.03
HMGB1-208ENST00000490788 RNF146Q9NTX7 359 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 TBC1D14Q9P2M4 693 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 SUFUQ9UMX1 484 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 PCDHA12Q9UN75 941 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 DHDHQ9UQ10 334 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 DTX4Q9Y2E6 619 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 SLC4A4Q9Y6R1 1079 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 LRRC37A3O60309 1634 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 DUOX2Q9NRD8 1548 aa2.37□□□□□ -2.03
HMGB1-208ENST00000490788 LAMB4A4D0S4 1761 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 ZFYVE9O95405 1425 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 ERBINQ96RT1 1412 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 PHRF1Q9P1Y6 1649 aaKnown RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 TCRBV7S3A2A0A539 114 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 A6NNC1 897 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 VGLL3A8MV65 326 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 KCNJ18B7U540 433 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 E7EVH7 732 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 H0Y3Z8 333 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 GRM8O00222 908 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 MDM4O15151 490 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 KIF1CO43896 1103 aaKnown RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 HEXIM1O94992 359 aaKnown RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 EPN2O95208 641 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 NTN1O95631 604 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 TFRCP02786 760 aaKnown RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 KLKB1P03952 638 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 CYP1A2P05177 515 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 PTMAP06454 111 aaKnown RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 CYP4B1P13584 511 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 TNNT1P13805 278 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 SKIV2L2P42285 1042 aaKnown RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 POLD2P49005 469 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 RPS6KA3P51812 740 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 PGGT1BP53609 377 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 P2RX3P56373 397 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 GALNT1Q10472 559 aaPredicted RBP2.36□□□□□ -2.03
HMGB1-208ENST00000490788 FOXO1Q12778 655 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 MAPK7Q13164 816 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 PDCLQ13371 301 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 SEMA3AQ14563 771 aa2.36□□□□□ -2.03
HMGB1-208ENST00000490788 PKN2Q16513 984 aaKnown RBP2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms