RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 SF3B1O75533 1304 aaKnown RBP eCLIP13.41□□□□□ -0.264e-6■□□□□ 8.6
HMGN1-216ENST00000486741 E9PAM4 449 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 TSHRP16473 764 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 CDH13P55290 713 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 TBL3Q12788 808 aaKnown RBP13.41□□□□□ -0.26
HMGN1-216ENST00000486741 FUT11Q495W5 492 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 VARS2Q5ST30 1063 aaKnown RBP13.41□□□□□ -0.26
HMGN1-216ENST00000486741 CAPRIN2Q6IMN6 1127 aaKnown RBP13.41□□□□□ -0.26
HMGN1-216ENST00000486741 GPRIN1Q7Z2K8 1008 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 POLR1EQ9GZS1 481 aaKnown RBP13.41□□□□□ -0.26
HMGN1-216ENST00000486741 DLGAP2Q9P1A6 1054 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 BAG5Q9UL15 447 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 COL24A1Q17RW2 1714 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 MYO7AQ13402 2215 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 GUCA1CO95843 209 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 KCNE1P15382 129 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 GABRB2P47870 512 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 POU4F1Q01851 419 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 DSC2Q02487 901 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 BNIP1Q12981 228 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 LBRQ14739 615 aaKnown RBP13.41□□□□□ -0.26
HMGN1-216ENST00000486741 GRM3Q14832 879 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 CYTH1Q15438 398 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 PRSS55Q6UWB4 352 aaPredicted RBP13.41□□□□□ -0.26
HMGN1-216ENST00000486741 MAMDC4Q6UXC1 1216 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 FAXDC2Q96IV6 333 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 USP29Q9HBJ7 922 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 TMEM39AQ9NV64 488 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.41□□□□□ -0.265e-15■■■■□ 19.6
HMGN1-216ENST00000486741 UBA2Q9UBT2 640 aaPredicted RBP13.41□□□□□ -0.26
HMGN1-216ENST00000486741 SOX13Q9UN79 622 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 TEX264Q9Y6I9 313 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 HOXA2O43364 376 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 RTN3O95197 1032 aaPredicted RBP13.41□□□□□ -0.26
HMGN1-216ENST00000486741 AP2A1O95782 977 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 VAV1P15498 845 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 ABL2P42684 1182 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 PEX6Q13608 980 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 CYLC2Q14093 348 aaPredicted RBP13.41□□□□□ -0.26
HMGN1-216ENST00000486741 SNX30Q5VWJ9 437 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 FSTL4Q6MZW2 842 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 TMEM154Q6P9G4 183 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 GLT6D1Q7Z4J2 308 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 PYDC1Q8WXC3 89 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 GDAP2Q9NXN4 497 aa13.41□□□□□ -0.26
HMGN1-216ENST00000486741 KRT36O76013 467 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 SEC24DO94855 1032 aaPredicted RBP13.4□□□□□ -0.26
HMGN1-216ENST00000486741 VHLP40337 213 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 CXCR3P49682 368 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 ACLYP53396 1101 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 KLC1Q07866 573 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 PDE1CQ14123 709 aaPredicted RBP13.4□□□□□ -0.26
HMGN1-216ENST00000486741 AGMOQ6ZNB7 445 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 KBTBD7Q8WVZ9 684 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 TRIB2Q92519 343 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 ZBTB18Q99592 522 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 TXLNGYQ9BZA5 131 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 SLC39A8Q9C0K1 460 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 RCOR3Q9P2K3 495 aaPredicted RBP13.4□□□□□ -0.26
HMGN1-216ENST00000486741 TK2O00142 265 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 NOL3O60936 208 aaKnown RBP13.4□□□□□ -0.26
HMGN1-216ENST00000486741 CABYRO75952 493 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 ZNF865P0CJ78 1059 aaPredicted RBP13.4□□□□□ -0.26
HMGN1-216ENST00000486741 THRAP10827 490 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 CASP10Q92851 521 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 VRTNQ9H8Y1 702 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 TMEM88BA6NKF7 163 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 PTGESO14684 152 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 CASQ2O14958 399 aaPredicted RBP13.4□□□□□ -0.26
HMGN1-216ENST00000486741 CRTAMO95727 393 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 EEF1B2P24534 225 aaKnown RBP13.4□□□□□ -0.26
HMGN1-216ENST00000486741 CYP2C18P33260 490 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 PRKAA1Q13131 559 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 PFKFB4Q16877 469 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 PPP1R15BQ5SWA1 713 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 APBB2Q92870 758 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 SDCCAG3Q96C92 435 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 SH3GL3Q99963 347 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.4□□□□□ -0.26
HMGN1-216ENST00000486741 PSAT1Q9Y617 370 aa13.4□□□□□ -0.26
HMGN1-216ENST00000486741 EVPLQ92817 2033 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 AKAP10O43572 662 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 KATNA1O75449 491 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 RBP1P09455 135 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 SLC9A4Q6AI14 798 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 SCIMPQ6UWF3 145 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 CAND1Q86VP6 1230 aaKnown RBP13.39□□□□□ -0.27
HMGN1-216ENST00000486741 ZNF280BQ86YH2 543 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 RASAL3Q86YV0 1011 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 LRRC43Q8N309 656 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 ABTB1Q969K4 478 aaPredicted RBP13.39□□□□□ -0.27
HMGN1-216ENST00000486741 PSMG2Q969U7 264 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 EME1Q96AY2 570 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 CAPNS2Q96L46 248 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 UROC1Q96N76 676 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 PRKD2Q9BZL6 878 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 SAR1AQ9NR31 198 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 TRPC5OSA6NMA1 111 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 VPS26AO75436 327 aa13.39□□□□□ -0.27
HMGN1-216ENST00000486741 TCEA3O75764 348 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms