RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 WACQ9BTA9 647 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 RBM38Q9H0Z9 239 aaKnown RBP6.35□□□□□ -1.39
USP40-213ENST00000483216 TAOK3Q9H2K8 898 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 CXorf56Q9H5V9 222 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 PLAC1Q9HBJ0 212 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 NLKQ9UBE8 527 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 CACNA1IQ9P0X4 2223 aa6.35□□□□□ -1.39
USP40-213ENST00000483216 MRC2Q9UBG0 1479 aa6.34□□□□□ -1.39
USP40-213ENST00000483216 DDTLA6NHG4 134 aaPredicted RBP6.34□□□□□ -1.39
USP40-213ENST00000483216 FAM157AC9JC47 383 aa6.34□□□□□ -1.39
USP40-213ENST00000483216 TNFRSF13BO14836 293 aaPredicted RBP6.34□□□□□ -1.39
USP40-213ENST00000483216 SERPINC1P01008 464 aa6.34□□□□□ -1.39
USP40-213ENST00000483216 CHRM4P08173 479 aa6.34□□□□□ -1.39
USP40-213ENST00000483216 MMP3P08254 477 aa6.34□□□□□ -1.39
USP40-213ENST00000483216 ENO3P13929 434 aaPredicted RBP6.34□□□□□ -1.39
USP40-213ENST00000483216 AVPR1AP37288 418 aa6.34□□□□□ -1.39
USP40-213ENST00000483216 ZP1P60852 638 aa6.34□□□□□ -1.39
USP40-213ENST00000483216 SLC18A3Q16572 532 aa6.34□□□□□ -1.39
USP40-213ENST00000483216 DCAF12L2Q5VW00 463 aa6.34□□□□□ -1.39
USP40-213ENST00000483216 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.34□□□□□ -1.39
USP40-213ENST00000483216 STAMQ92783 540 aa6.34□□□□□ -1.39
USP40-213ENST00000483216 CD180Q99467 661 aa6.34□□□□□ -1.39
USP40-213ENST00000483216 CLSTN3Q9BQT9 956 aa6.34□□□□□ -1.39
USP40-213ENST00000483216 ERICH3Q5RHP9 1530 aa6.34□□□□□ -1.39
USP40-213ENST00000483216 IL1AP01583 271 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 CYP1A2P05177 515 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 SNHG28P0DPA3 235 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 CCR5P51681 352 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 GPR18Q14330 331 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 ATG16L1Q676U5 607 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 NCAPH2Q6IBW4 605 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 Q6ZTK2 550 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 GHDCQ8N2G8 530 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 OR4N2Q8NGD1 307 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 CEP76Q8TAP6 659 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 TMEM163Q8TC26 289 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 ASB5Q8WWX0 329 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 POLDIP3Q9BY77 421 aaKnown RBP6.33□□□□□ -1.4
USP40-213ENST00000483216 TMEM160Q9NX00 188 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 CNPY2Q9Y2B0 182 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 RAPGEF2Q9Y4G8 1499 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 CLIP1P30622 1438 aa6.33□□□□□ -1.4
USP40-213ENST00000483216 CCER2I3L3R5 266 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 ADAP00813 363 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 CDC25AP30304 524 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 ARRB2P32121 409 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 RFC1P35251 1148 aaPredicted RBP6.32□□□□□ -1.4
USP40-213ENST00000483216 GPR12P47775 334 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 PPP3CCP48454 512 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 ENTPD1P49961 510 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 TMPRSS3P57727 454 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 ROR2Q01974 943 aaKnown RBP6.32□□□□□ -1.4
USP40-213ENST00000483216 TLE2Q04725 743 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 KHDRBS1Q07666 443 aaKnown RBP eCLIP6.32□□□□□ -1.4
USP40-213ENST00000483216 FHL1Q13642 323 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 RAPGEF1Q13905 1077 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 FBXO43Q4G163 708 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 SMAP1Q8IYB5 467 aaPredicted RBP6.32□□□□□ -1.4
USP40-213ENST00000483216 EXOC8Q8IYI6 725 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 SAMD14Q8IZD0 417 aaPredicted RBP6.32□□□□□ -1.4
USP40-213ENST00000483216 LSM14AQ8ND56 463 aaKnown RBP6.32□□□□□ -1.4
USP40-213ENST00000483216 SLC35F5Q8WV83 523 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 RAB40AQ8WXH6 277 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 HSPH1Q92598 858 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.32□□□□□ -1.4
USP40-213ENST00000483216 LMAN2LQ9H0V9 348 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 CATSPERBQ9H7T0 1116 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 MRPL44Q9H9J2 332 aaKnown RBP6.32□□□□□ -1.4
USP40-213ENST00000483216 ENTPD7Q9NQZ7 604 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 NCKIPSDQ9NZQ3 722 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 RAI2Q9Y5P3 530 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 KIF27Q86VH2 1401 aa6.32□□□□□ -1.4
USP40-213ENST00000483216 PRXQ9BXM0 1461 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 A0A096LPK6 155 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 FAM90A8PA6NJQ4 464 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 BECN2A8MW95 431 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 MS4A18H0YCH9 400 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 SPRY3O43610 288 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 ALPLP05186 524 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 FAM90A13PP0C7W8 464 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 FAM90A24PP0C7X0 464 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 GNLYP22749 145 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 KCNJ4P48050 445 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 CDH12P55289 794 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 MAPK7Q13164 816 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 GLIPR1L2Q4G1C9 344 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 GORABQ5T7V8 394 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 OTUD1Q5VV17 481 aaPredicted RBP6.31□□□□□ -1.4
USP40-213ENST00000483216 ZDHHC17Q8IUH5 632 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 CADM3Q8N126 398 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 TEX45Q8NA69 505 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 ZMIZ2Q8NF64 920 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 CNOT9Q92600 299 aaKnown RBP6.31□□□□□ -1.4
USP40-213ENST00000483216 SF3B5Q9BWJ5 86 aaKnown RBP6.31□□□□□ -1.4
USP40-213ENST00000483216 PHF7Q9BWX1 381 aaPredicted RBP6.31□□□□□ -1.4
USP40-213ENST00000483216 MROH8Q9H579 483 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 ALKBH4Q9NXW9 302 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 PLK2Q9NYY3 685 aa6.31□□□□□ -1.4
USP40-213ENST00000483216 THOC2Q8NI27 1593 aaKnown RBP6.31□□□□□ -1.4
USP40-213ENST00000483216 KIF21AQ7Z4S6 1674 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms