RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 CPLX2Q6PUV4 134 aaKnown RBP4.4□□□□□ -1.71
VPS13D-207ENST00000476169 PTCHD4Q6ZW05 846 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 GSTA5Q7RTV2 222 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 TICAM1Q8IUC6 712 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 ARL6IP6Q8N6S5 226 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 RAB40AQ8WXH6 277 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 PRR11Q96HE9 360 aaPredicted RBP4.4□□□□□ -1.71
VPS13D-207ENST00000476169 PBKQ96KB5 322 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 Q96MF0 132 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 CINPQ9BW66 212 aaPredicted RBP4.4□□□□□ -1.71
VPS13D-207ENST00000476169 NPLQ9BXD5 320 aaPredicted RBP4.4□□□□□ -1.71
VPS13D-207ENST00000476169 KRTAP4-6Q9BYQ5 205 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 TRIM31Q9BZY9 425 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 SAP30LQ9HAJ7 183 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 TRPV4Q9HBA0 871 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 SNX15Q9NRS6 342 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 PDRG1Q9NUG6 133 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 MGAT4CQ9UBM8 478 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 KLQ9UEF7 1012 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 CDH22Q9UJ99 828 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 NENFQ9UMX5 172 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 GABRQQ9UN88 632 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 TESMINQ9Y4I5 508 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 COPG1Q9Y678 874 aaKnown RBP4.4□□□□□ -1.71
VPS13D-207ENST00000476169 CAPN7Q9Y6W3 813 aa4.4□□□□□ -1.71
VPS13D-207ENST00000476169 TRAV34A0A0B4J273 112 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 ARHGAP10A1A4S6 786 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 WDR27A2RRH5 827 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 NPIPB13A6NJU9 1138 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 C3orf70A6NLC5 250 aaPredicted RBP4.39□□□□□ -1.71
VPS13D-207ENST00000476169 LRRC53A6NM62 1247 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 NPIPB5A8MRT5 1133 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 NPIPB4C9JG80 1138 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 DDX39AO00148 427 aaKnown RBP4.39□□□□□ -1.71
VPS13D-207ENST00000476169 CHL1O00533 1208 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 CPLX1O14810 134 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 PLSCR1O15162 318 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 WDR46O15213 610 aaKnown RBP4.39□□□□□ -1.71
VPS13D-207ENST00000476169 OR2C1O95371 312 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 GALTP07902 379 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 TMIGD3P0DMS9 266 aaPredicted RBP4.39□□□□□ -1.71
VPS13D-207ENST00000476169 SELLP14151 372 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 ZNF8P17098 575 aaPredicted RBP4.39□□□□□ -1.71
VPS13D-207ENST00000476169 HLA-DPA1P20036 260 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 CTGFP29279 349 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 FMO4P31512 558 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 CIITAP33076 1130 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 FOLR3P41439 243 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 RPS6KA3P51812 740 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 MVDP53602 400 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 HDAC4P56524 1084 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 MRPS35P82673 323 aaKnown RBP4.39□□□□□ -1.71
VPS13D-207ENST00000476169 FZD5Q13467 585 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 DNASE1L3Q13609 305 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 PCLAFQ15004 111 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 FAM187BQ17R55 369 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 GXYLT1Q4G148 440 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 ZNF628Q5EBL2 1059 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 PLAC9Q5JTB6 97 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 RAB12Q6IQ22 244 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 ACSM6Q6P461 480 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 KCNV1Q6PIU1 500 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 TSSK4Q6SA08 328 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 SERPINA13PQ6UXR4 307 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 Q6ZWC4 215 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 PARS2Q7L3T8 475 aaKnown RBP4.39□□□□□ -1.71
VPS13D-207ENST00000476169 PIWIL3Q7Z3Z3 882 aaKnown RBP4.39□□□□□ -1.71
VPS13D-207ENST00000476169 ADGRA1Q86SQ6 560 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 ARHGAP12Q8IWW6 846 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 GHDCQ8N2G8 530 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 C10orf53Q8N6V4 93 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 PNPLA1Q8N8W4 532 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 OR52L2PQ8NGH6 319 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 TFAP2BQ92481 460 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 KRT35Q92764 455 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 GTF3C6Q969F1 213 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 RFKQ969G6 155 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 ZKSCAN4Q969J2 545 aaPredicted RBP4.39□□□□□ -1.71
VPS13D-207ENST00000476169 EXOC4Q96A65 974 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 LENG9Q96B70 501 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 CCDC114Q96M63 670 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 PLEKHG4BQ96PX9 1271 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 CDK5RAP1Q96SZ6 601 aaKnown RBP4.39□□□□□ -1.71
VPS13D-207ENST00000476169 SCPEP1Q9HB40 452 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 SPATS2LQ9NUQ6 558 aaKnown RBP4.39□□□□□ -1.71
VPS13D-207ENST00000476169 ADPRHL2Q9NX46 363 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 SMPD4Q9NXE4 827 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 AMFRQ9UKV5 643 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 CNOT11Q9UKZ1 510 aaKnown RBP4.39□□□□□ -1.71
VPS13D-207ENST00000476169 NACADO15069 1562 aa4.39□□□□□ -1.71
VPS13D-207ENST00000476169 TRBC2A0A5B9 178 aa4.38□□□□□ -1.71
VPS13D-207ENST00000476169 PIPSLA2A3N6 862 aa4.38□□□□□ -1.71
VPS13D-207ENST00000476169 INO80B-WBP1J3KQ70 363 aa4.38□□□□□ -1.71
VPS13D-207ENST00000476169 MPPED1O15442 326 aa4.38□□□□□ -1.71
VPS13D-207ENST00000476169 LIASO43766 372 aa4.38□□□□□ -1.71
VPS13D-207ENST00000476169 FMO6PO60774 539 aa4.38□□□□□ -1.71
VPS13D-207ENST00000476169 HMMRO75330 724 aa4.38□□□□□ -1.71
VPS13D-207ENST00000476169 SEC31AO94979 1220 aaKnown RBP4.38□□□□□ -1.71
VPS13D-207ENST00000476169 IPO7O95373 1038 aaKnown RBP4.38□□□□□ -1.71
VPS13D-207ENST00000476169 PEX11BO96011 259 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms