RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 NEK11Q8NG66 645 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 FAM172AQ8WUF8 416 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 KLK6Q92876 244 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 ERGIC2Q96RQ1 377 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 OSBPL2Q9H1P3 480 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 FZD3Q9NPG1 666 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 DYRK4Q9NR20 520 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 ANO10Q9NW15 660 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 KNTC1P50748 2209 aa19.17■□□□□ 0.66
CCDC88B-206ENST00000473405 SLC31A1O15431 190 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 LRIG2O94898 1065 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 LDOC1O95751 146 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 KRT3P12035 628 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 RHOQP17081 205 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 ITGB7P26010 798 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 RECQLP46063 649 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 MAPKAPK2P49137 400 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 CCNHP51946 323 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 SLC20A2Q08357 652 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 ARL13BQ3SXY8 428 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 SEL1L3Q68CR1 1132 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 RWDD4Q6NW29 188 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 SASS6Q6UVJ0 657 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 MON1BQ7L1V2 547 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 C3orf20Q8ND61 904 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 TSC1Q92574 1164 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 ARHGEF2Q92974 986 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 VOPP1Q96AW1 172 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 PPP1R16AQ96I34 528 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 GBP4Q96PP9 640 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 TMEM248Q9NWD8 314 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 ADAM22Q9P0K1 906 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 DNAI1Q9UI46 699 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 PCDHGA1Q9Y5H4 931 aa19.16■□□□□ 0.66
CCDC88B-206ENST00000473405 CXorf51AA0A1B0GTR3 108 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 TCRBV5S1A1TA0A578 114 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 LRRC10BA6NIK2 292 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 MAGEC1O60732 1142 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 SDC3O75056 442 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 PLEKP08567 350 aaPredicted RBP19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 THEGLP0DJG4 465 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 ADRB3P13945 408 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 UBXN1Q04323 297 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 CCDC15Q0P6D6 951 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 CARD16Q5EG05 197 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 GCNT7Q6ZNI0 430 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 NTAN1Q96AB6 310 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 KLHDC7BQ96G42 594 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 HEPHQ9BQS7 1158 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 TM6SF2Q9BZW4 377 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 RETREG1Q9H6L5 497 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 DKK4Q9UBT3 224 aa19.15■□□□□ 0.66
CCDC88B-206ENST00000473405 RFPL3O75679 317 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 CALB1P05937 261 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 GPD1P21695 349 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 HNRNPA2B1P22626 353 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 ETFBP38117 255 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 NEK3P51956 506 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 CLDN6P56747 220 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 WDR59Q6PJI9 974 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 PARS2Q7L3T8 475 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 SLC22A18ASQ8N1D0 253 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 ANKRD20A12PQ8NF67 263 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 OR13H1Q8NG92 308 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 ISG20Q96AZ6 181 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 TBC1D31Q96DN5 1066 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 PCMTD1Q96MG8 357 aaPredicted RBP19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 ZDHHC6Q9H6R6 413 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 CAAP1Q9H8G2 361 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 GPSM3Q9Y4H4 160 aa19.14■□□□□ 0.65
CCDC88B-206ENST00000473405 TRABD2BA6NFA1 517 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 CCP110O43303 1012 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 PCDH8O95206 1070 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 ATP1A3P13637 1013 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 AKT2P31751 481 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 L1CAMP32004 1257 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 GKP32189 559 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 DNA2P51530 1060 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 CLDN2P57739 230 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 C1QBPQ07021 282 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 FGL2Q14314 439 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 PROX2Q3B8N5 592 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 PPP1R15BQ5SWA1 713 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 ABI3BPQ7Z7G0 1075 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 TMPRSS12Q86WS5 348 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 PLPP6Q8IY26 295 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 PYROXD2Q8N2H3 581 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 SLC25A45Q8N413 288 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 OR6K2Q8NGY2 324 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 AGPAT1Q99943 283 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 SELENOOQ9BVL4 669 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 MAGEH1Q9H213 219 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 NOL6Q9H6R4 1146 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 HECAQ9UBI9 543 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 FADS3Q9Y5Q0 445 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 BAHCC1Q9P281 2608 aa19.13■□□□□ 0.65
CCDC88B-206ENST00000473405 GCN1Q92616 2671 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 SIGLEC16A6NMB1 481 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 TRIM38O00635 465 aa19.12■□□□□ 0.65
CCDC88B-206ENST00000473405 AP1G1O43747 822 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms