RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 TMEM248Q9NWD8 314 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 VPS28Q9UK41 221 aa18.11■□□□□ 0.49
COL7A1-205ENST00000465238 APOBEC2Q9Y235 224 aaKnown RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 FNDC3AQ9Y2H6 1198 aaKnown RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 DSPP15924 2871 aaKnown RBP18.11■□□□□ 0.49
COL7A1-205ENST00000465238 ILVBLA1L0T0 632 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 FGF10O15520 208 aaPredicted RBP18.1■□□□□ 0.49
COL7A1-205ENST00000465238 ARHGAP6O43182 974 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 SRPRAP08240 638 aaKnown RBP18.1■□□□□ 0.49
COL7A1-205ENST00000465238 KRT7P08729 469 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 CD27P26842 260 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 GJC1P36383 396 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 SLC1A1P43005 524 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 GRIA4P48058 902 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 MAPKAPK2P49137 400 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 NAP1L1P55209 391 aaKnown RBP18.1■□□□□ 0.49
COL7A1-205ENST00000465238 SULT2A1Q06520 285 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 ZNF783Q6ZMS7 281 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 DBX2Q6ZNG2 339 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 CPNE8Q86YQ8 564 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 CALR3Q96L12 384 aaKnown RBP18.1■□□□□ 0.49
COL7A1-205ENST00000465238 MRGPRX3Q96LB0 322 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 DESI2Q9BSY9 194 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 PABPC3Q9H361 631 aaKnown RBP18.1■□□□□ 0.49
COL7A1-205ENST00000465238 MTG2Q9H4K7 406 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 TM9SF3Q9HD45 589 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 DONSONQ9NYP3 566 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 DNAI1Q9UI46 699 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 SLCO1B1Q9Y6L6 691 aa18.1■□□□□ 0.49
COL7A1-205ENST00000465238 ZFYVE26Q68DK2 2539 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 FREM2Q5SZK8 3169 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 TARSL2A2RTX5 802 aaKnown RBP18.09■□□□□ 0.49
COL7A1-205ENST00000465238 RCCD1A6NED2 376 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 H3BRJ5 948 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 FLRT2O43155 660 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 PJA2O43164 708 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 SIN3BO75182 1162 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 FSBPO95073 299 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 NNMTP40261 264 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 ARL4AP40617 200 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 HCAR3P49019 387 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 ECT2LQ008S8 904 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 KIF5AQ12840 1032 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 KRT81Q14533 505 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 SUZ12Q15022 739 aaKnown RBP18.09■□□□□ 0.49
COL7A1-205ENST00000465238 DPYSL2Q16555 572 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 KIF19Q2TAC6 998 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 ZFYVE27Q5T4F4 411 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 TXNRD3NBQ6F5E7 133 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 NLRP14Q86W24 1093 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 RTL3Q8N8U3 475 aaKnown RBP18.09■□□□□ 0.49
COL7A1-205ENST00000465238 OR52K2Q8NGK3 314 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 GANCQ8TET4 914 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 SPON2Q9BUD6 331 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 FBXL12Q9NXK8 326 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 ZNF212Q9UDV6 495 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 NEU3Q9UQ49 428 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 ERVW-1Q9UQF0 538 aa18.09■□□□□ 0.49
COL7A1-205ENST00000465238 TMEM131Q92545 1883 aa18.08■□□□□ 0.49
COL7A1-205ENST00000465238 SRRM3A6NNA2 597 aaPredicted RBP18.08■□□□□ 0.48
COL7A1-205ENST00000465238 BTNL10A8MVZ5 291 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 SPOPO43791 374 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 PTMAP06454 111 aaKnown RBP18.08■□□□□ 0.48
COL7A1-205ENST00000465238 GOT1P17174 413 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 ETFBP38117 255 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 NUMBP49757 651 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 CDH6P55285 790 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 TAS2R40P59535 323 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 GNA12Q03113 381 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 CST6Q15828 149 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 KIAA0895LQ68EN5 471 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 RFX8Q6ZV50 586 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 PNPLA1Q8N8W4 532 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 OR7D4Q8NG98 312 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 BAHD1Q8TBE0 780 aaPredicted RBP18.08■□□□□ 0.48
COL7A1-205ENST00000465238 ALG14Q96F25 216 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 CDC6Q99741 560 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 C2orf49Q9BVC5 232 aaPredicted RBP18.08■□□□□ 0.48
COL7A1-205ENST00000465238 LACRTQ9GZZ8 138 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 CWC15Q9P013 229 aaKnown RBP18.08■□□□□ 0.48
COL7A1-205ENST00000465238 SLC25A13Q9UJS0 675 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 ANKRD6Q9Y2G4 727 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 OR51B4Q9Y5P0 310 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 SNX11Q9Y5W9 270 aa18.08■□□□□ 0.48
COL7A1-205ENST00000465238 A0A0D9SEW6 157 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 EDDM13A0A1B0GTR0 161 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 WASH4PA8MWX3 477 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 BUB1O43683 1085 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 BUB1BO60566 1050 aaPredicted RBP18.07■□□□□ 0.48
COL7A1-205ENST00000465238 RAMP2O60895 175 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 COMTP21964 271 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 CTSOP43234 321 aaPredicted RBP18.07■□□□□ 0.48
COL7A1-205ENST00000465238 ATP13A4Q4VNC1 1196 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 C9orf64Q5T6V5 341 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 MAP7D3Q8IWC1 876 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 KCTD6Q8NC69 237 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 RHBDD1Q8TEB9 315 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 MAGEH1Q9H213 219 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 PCDH18Q9HCL0 1135 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 ATP13A1Q9HD20 1204 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms