RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 DNAJC28Q9NX36 388 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 CHCHD3Q9NX63 227 aaKnown RBP12.62□□□□□ -0.39
HDAC4-208ENST00000463007 SFMBT1Q9UHJ3 866 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 SORCS3Q9UPU3 1222 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 USP3Q9Y6I4 520 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 A0A0J9YVX5 310 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 RGSL1A5PLK6 1076 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 RRN3P2A6NIE6 340 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 CLDN5O00501 218 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 SPTLC1O15269 473 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 GCATO75600 419 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 TRMUO75648 421 aaKnown RBP12.62□□□□□ -0.39
HDAC4-208ENST00000463007 PGAM1P18669 254 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 ME2P23368 584 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 PTPN9P43378 593 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 NDUFV1P49821 464 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 ADGRE1Q14246 886 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 LRRC8EQ6NSJ5 796 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 ZDHHC17Q8IUH5 632 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 CRYBG2Q8N1P7 616 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 OR6J1Q8NGC5 347 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 NCSTNQ92542 709 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 SLC45A3Q96JT2 553 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 RTKNQ9BST9 563 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 NXF3Q9H4D5 531 aaKnown RBP12.62□□□□□ -0.39
HDAC4-208ENST00000463007 ZDHHC7Q9NXF8 308 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 GDAP2Q9NXN4 497 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 CACNG4Q9UBN1 327 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 PCDHB12Q9Y5F1 795 aa12.62□□□□□ -0.39
HDAC4-208ENST00000463007 PDE4DIPQ5VU43 2346 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 PLOD2O00469 737 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 ATP6V1G1O75348 118 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 TIPRLO75663 272 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 SMIM10L2AP0DMW4 78 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 SMIM10L2BP0DMW5 78 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 SPRP35270 261 aaPredicted RBP12.61□□□□□ -0.39
HDAC4-208ENST00000463007 NIPAL4Q0D2K0 466 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 GRM3Q14832 879 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 MORN1Q5T089 497 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 LPCAT2Q7L5N7 544 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 IFNEQ86WN2 208 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 SLC41A1Q8IVJ1 513 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 DEFB106AQ8N104 65 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 TSPAN14Q8NG11 270 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 OR9I1Q8NGQ6 314 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 SREK1Q8WXA9 508 aaKnown RBP12.61□□□□□ -0.39
HDAC4-208ENST00000463007 PHF21BQ96EK2 531 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 ZNF670Q9BS34 389 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 FAM49AQ9H0Q0 323 aaPredicted RBP12.61□□□□□ -0.39
HDAC4-208ENST00000463007 GOLGA2P5Q9HBQ8 144 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 CHST12Q9NRB3 414 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 EPS15L1Q9UBC2 864 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 VANGL2Q9ULK5 521 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 NRCAMQ92823 1304 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 AKAP10O43572 662 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 MT-ND1P03886 318 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 KCNE1P15382 129 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 PLOD1Q02809 727 aaPredicted RBP12.61□□□□□ -0.39
HDAC4-208ENST00000463007 MPP3Q13368 585 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 GRM2Q14416 872 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 POU6F1Q14863 301 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 DPYSL2Q16555 572 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 SLC26A9Q7LBE3 791 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 CHST15Q7LFX5 561 aaPredicted RBP12.61□□□□□ -0.39
HDAC4-208ENST00000463007 SLC29A1Q99808 456 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 FRMD8Q9BZ67 464 aaPredicted RBP12.61□□□□□ -0.39
HDAC4-208ENST00000463007 TRPC7Q9HCX4 862 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 C7orf72A4D263 438 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 G3V2L1 256 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 BOLA2-SMG1P6H3BVE0 249 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 M0QYT0 321 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 PDLIM1O00151 329 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 VAPBO95292 243 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 AKAP5P24588 427 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 RPL14P50914 215 aaKnown RBP12.61□□□□□ -0.39
HDAC4-208ENST00000463007 PRPSAP1Q14558 356 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 C16orf89Q6UX73 402 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 ADGRG6Q86SQ4 1221 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 DENND6AQ8IWF6 608 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 ZNF786Q8N393 782 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 ZNF513Q8N8E2 541 aaPredicted RBP12.61□□□□□ -0.39
HDAC4-208ENST00000463007 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.61□□□□□ -0.39
HDAC4-208ENST00000463007 VPS39Q96JC1 886 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 FTHL17Q9BXU8 183 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 SENP6Q9GZR1 1112 aaPredicted RBP12.61□□□□□ -0.39
HDAC4-208ENST00000463007 PIF1Q9H611 641 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 PTTG2Q9NZH5 202 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 BFARQ9NZS9 450 aa12.61□□□□□ -0.39
HDAC4-208ENST00000463007 ZNF839A8K0R7 811 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 KPNA7A9QM74 516 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 FAM72CH0Y354 149 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 CAPN15O75808 1086 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 NMBRP28336 390 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 CDC42EP1Q00587 391 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 SEMA5AQ13591 1074 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 PPP1R3AQ16821 1122 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 GEN1Q17RS7 908 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 FAM72AQ5TYM5 149 aa12.6□□□□□ -0.39
HDAC4-208ENST00000463007 OTUD1Q5VV17 481 aaPredicted RBP12.6□□□□□ -0.39
HDAC4-208ENST00000463007 FAM72DQ6L9T8 149 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms