RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CNBD2Q96M20 576 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 COG4Q9H9E3 785 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 ENTPD7Q9NQZ7 604 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 LATS2Q9NRM7 1088 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 PADI3Q9ULW8 664 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 SLC27A5Q9Y2P5 690 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 PCDHB5Q9Y5E4 795 aa11.8□□□□□ -0.52
NPHP4-204ENST00000460696 COL24A1Q17RW2 1714 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 NRP1O14786 923 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 UBDO15205 165 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 SRP72O76094 671 aaKnown RBP11.79□□□□□ -0.52
NPHP4-204ENST00000460696 AP2A1O95782 977 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 CYP3A5P20815 502 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 MPSTP25325 297 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 HADHAP40939 763 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 RAB27AP51159 221 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 PRKD1Q15139 912 aaPredicted RBP11.79□□□□□ -0.52
NPHP4-204ENST00000460696 OLFML2BQ68BL8 750 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 TAC4Q86UU9 113 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 GPR63Q9BZJ6 419 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 RGS18Q9NS28 235 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 SMPD4Q9NXE4 827 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 BAG5Q9UL15 447 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 PCDHB7Q9Y5E2 793 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 HEATR9A2RTY3 570 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 TK2O00142 265 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 CCL22O00626 93 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 RBP1P09455 135 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 YWHAQP27348 245 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 TKTP29401 623 aaKnown RBP11.79□□□□□ -0.52
NPHP4-204ENST00000460696 PPARGP37231 505 aaPredicted RBP11.79□□□□□ -0.52
NPHP4-204ENST00000460696 SLC18A1P54219 525 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 SLC10A2Q12908 348 aaPredicted RBP11.79□□□□□ -0.52
NPHP4-204ENST00000460696 GRM3Q14832 879 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 IMPG1Q17R60 797 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 IYDQ6PHW0 289 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 ARHGAP18Q8N392 663 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 ZSCAN18Q8TBC5 510 aaPredicted RBP11.79□□□□□ -0.52
NPHP4-204ENST00000460696 DENND1AQ8TEH3 1009 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 NMRK1Q9NWW6 199 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 MARCH2Q9P0N8 246 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 SNX13Q9Y5W8 968 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 SLCO1B7G3V0H7 640 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 PRRG1O14668 218 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 HDAC3O15379 428 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 KIF1CO43896 1103 aaKnown RBP11.79□□□□□ -0.52
NPHP4-204ENST00000460696 COX4I1P13073 169 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 NMBRP28336 390 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 ZNF280DQ6N043 979 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 SLC30A9Q6PML9 568 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 CEP70Q8NHQ1 597 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 CXorf38Q8TB03 319 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 MAGEC3Q8TD91 643 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 GDPD5Q8WTR4 605 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 SEPT8Q92599 483 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 NCLNQ969V3 563 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 PBXIP1Q96AQ6 731 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 FBXO44Q9H4M3 255 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 PRDM16Q9HAZ2 1276 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 GEMIN8Q9NWZ8 242 aaKnown RBP11.79□□□□□ -0.52
NPHP4-204ENST00000460696 ZNF212Q9UDV6 495 aa11.79□□□□□ -0.52
NPHP4-204ENST00000460696 ARL5CA6NH57 179 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 ZBTB42B2RXF5 422 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 CNMDO75829 334 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 PYGLP06737 847 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 SERPINF2P08697 491 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 CRABP2P29373 138 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 SERPINH1P50454 418 aaKnown RBP11.78□□□□□ -0.52
NPHP4-204ENST00000460696 WNT3AP56704 352 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 SGO1Q5FBB7 561 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 LRRC43Q8N309 656 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 OLIG1Q8TAK6 271 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 TMEM169Q96HH4 297 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 PRKD2Q9BZL6 878 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 KLHL4Q9C0H6 718 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 MRPL46Q9H2W6 279 aaKnown RBP11.78□□□□□ -0.52
NPHP4-204ENST00000460696 ALG9Q9H6U8 611 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 YY1AP1Q9H869 796 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 VRTNQ9H8Y1 702 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 NKX1-2Q9UD57 310 aaPredicted RBP11.78□□□□□ -0.52
NPHP4-204ENST00000460696 FAM50BQ9Y247 325 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 PSAT1Q9Y617 370 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.78□□□□□ -0.52
NPHP4-204ENST00000460696 TBKBP1A7MCY6 615 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 NT5C1B-RDH14C9J2C7 533 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 ITM2AO43736 263 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 ALDH2P05091 517 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 VAV1P15498 845 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 IL10P22301 178 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 RPL9P32969 192 aaKnown RBP11.78□□□□□ -0.52
NPHP4-204ENST00000460696 SLC11A2P49281 568 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 SOX4Q06945 474 aaPredicted RBP11.78□□□□□ -0.52
NPHP4-204ENST00000460696 ZNF177Q13360 481 aaPredicted RBP11.78□□□□□ -0.52
NPHP4-204ENST00000460696 CCDC85BQ15834 202 aaPredicted RBP11.78□□□□□ -0.52
NPHP4-204ENST00000460696 FUT11Q495W5 492 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 TIGD5Q53EQ6 642 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 ACSBG2Q5FVE4 666 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 CYP2R1Q6VVX0 501 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 MIEF2Q96C03 454 aa11.78□□□□□ -0.52
NPHP4-204ENST00000460696 CCDC126Q96EE4 140 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms