RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 MT-CO1P00395 513 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 CYP1A1P04798 512 aaPredicted RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 CALB1P05937 261 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 GP1BAP07359 652 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 MMEP08473 750 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 KRT3P12035 628 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 ADRB3P13945 408 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 RHOQP17081 205 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 CDK11BP21127 795 aaKnown RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 DGKAP23743 735 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 RRM1P23921 792 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 HTR7P34969 479 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 FLT3P36888 993 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 RABIFP47224 123 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 ACADVLP49748 655 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 DNA2P51530 1060 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 YBEYP58557 167 aaPredicted RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 TAS2R38P59533 333 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 POLR2FP61218 127 aaKnown RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 DAB2P98082 770 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 ATP11AP98196 1134 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 BNIP3Q12983 259 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 PTK2BQ14289 1009 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 GRM3Q14832 879 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 RTP5Q14D33 572 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 SHBQ15464 509 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 ZNF284Q2VY69 593 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 INO80DQ53TQ3 878 aaPredicted RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 HSP90AA4PQ58FG1 418 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 PRAMEF14Q5SWL7 426 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 NAA35Q5VZE5 725 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 RWDD4Q6NW29 188 aaKnown RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 DPY19L2P1Q6NXN4 242 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 SASS6Q6UVJ0 657 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 DPY19L3Q6ZPD9 716 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 CLEC17AQ6ZS10 378 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 BNIPLQ7Z465 357 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 ABI3BPQ7Z7G0 1075 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 FAM131BQ86XD5 332 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 SPATS2Q86XZ4 545 aaKnown RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 DRC7Q8IY82 874 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 LSMEM2Q8N112 164 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 TMEM145Q8NBT3 493 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 NEK11Q8NG66 645 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 OR52K2Q8NGK3 314 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 OR4C6Q8NH72 309 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 MDM1Q8TC05 714 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 RFFLQ8WZ73 363 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 GLMNQ92990 594 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 MARVELD3Q96A59 401 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 GRAMD1AQ96CP6 724 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 PCMTD1Q96MG8 357 aaPredicted RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 CFAP57Q96MR6 1250 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 LENG8Q96PV6 779 aaPredicted RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 PSMB7Q99436 277 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 SELENOOQ9BVL4 669 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 CALN1Q9BXU9 219 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 ABCG4Q9H172 646 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 VPS16Q9H269 839 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 SAMSN1Q9NSI8 373 aaKnown RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 ANO10Q9NW15 660 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 NLGN3Q9NZ94 848 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 MPP6Q9NZW5 540 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 ADAM22Q9P0K1 906 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 HECAQ9UBI9 543 aaPredicted RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 IPO11Q9UI26 975 aaKnown RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 AJAP1Q9UKB5 411 aaPredicted RBP7.21□□□□□ -1.26
VPS41-208ENST00000448833 CLCA2Q9UQC9 943 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 AK5Q9Y6K8 562 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 CSNK1G3Q9Y6M4 447 aa7.21□□□□□ -1.26
VPS41-208ENST00000448833 LRRC10BA6NIK2 292 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 C2CD4BA6NLJ0 364 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 SIGLEC16A6NMB1 481 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 EIF3CLB5ME19 914 aaKnown RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 K7ERQ8 282 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 PLK4O00444 970 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 WNT9AO14904 365 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 SCAMP1O15126 338 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 SMAD6O43541 496 aaKnown RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 KDELR3O43731 214 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 SNAP91O60641 907 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 RAMP2O60895 175 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 ZMPSTE24O75844 475 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 GSRP00390 522 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 CTSLP07711 333 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 PLEKP08567 350 aaPredicted RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 PNMA6AP0CW24 399 aaPredicted RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 CKMT1AP12532 417 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 TFE3P19532 575 aaPredicted RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 GLDCP23378 1020 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 ACTN2P35609 894 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 GGCXP38435 758 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 ANP32AP39687 249 aaKnown RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 RPIAP49247 311 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 IRAK1P51617 712 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 CCNHP51946 323 aaPredicted RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 METAP1P53582 386 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 GSCP56915 257 aaPredicted RBP7.2□□□□□ -1.26
VPS41-208ENST00000448833 YPEL5P62699 121 aa7.2□□□□□ -1.26
VPS41-208ENST00000448833 TARDBPQ13148 414 aaKnown RBP eCLIP7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms