RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TEX44Q53QW1 395 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 PLPP6Q8IY26 295 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 CCDC105Q8IYK2 499 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 TXNDC5Q8NBS9 432 aaKnown RBP16.04■□□□□ 0.16
USP40-206ENST00000443711 TSEN2Q8NCE0 465 aaKnown RBP16.04■□□□□ 0.16
USP40-206ENST00000443711 CCDC114Q96M63 670 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 NT5MQ9NPB1 228 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 LHX3Q9UBR4 397 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 FEZ2Q9UHY8 353 aaPredicted RBP16.04■□□□□ 0.16
USP40-206ENST00000443711 TRHDEQ9UKU6 1024 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 MMP17Q9ULZ9 603 aa16.04■□□□□ 0.16
USP40-206ENST00000443711 FARP1Q9Y4F1 1045 aaPredicted RBP16.04■□□□□ 0.16
USP40-206ENST00000443711 SGK1O00141 431 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 GSRP00390 522 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 HLA-EP13747 358 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 PRKCHP24723 683 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 MAGEA9P43362 315 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 KCNJ1P48048 391 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 CSNK1DP48730 415 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 FNTAP49354 379 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 SNRPD1P62314 119 aaKnown RBP16.03■□□□□ 0.16
USP40-206ENST00000443711 NSUN2Q08J23 767 aaKnown RBP eCLIP16.03■□□□□ 0.16
USP40-206ENST00000443711 WASHC5Q12768 1159 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 ZBTB17Q13105 803 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 STARD3Q14849 445 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 CARD16Q5EG05 197 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 CCDC137Q6PK04 289 aaKnown RBP16.03■□□□□ 0.16
USP40-206ENST00000443711 Q6ZS52 159 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 Q6ZVU0 165 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 GSTA5Q7RTV2 222 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 PID1Q7Z2X4 250 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 ZNF572Q7Z3I7 529 aaPredicted RBP16.03■□□□□ 0.16
USP40-206ENST00000443711 ZNF366Q8N895 744 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 FAM71DQ8N9W8 422 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 MNS1Q8NEH6 495 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 SPATA4Q8NEY3 305 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 GRK7Q8WTQ7 553 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 PTPRN2Q92932 1015 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 GDAP1L1Q96MZ0 367 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 RUNDC3BQ96NL0 473 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 GABRG3Q99928 467 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 TNKS2Q9H2K2 1166 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 CHRDQ9H2X0 955 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 ATP8A1Q9Y2Q0 1164 aa16.03■□□□□ 0.16
USP40-206ENST00000443711 CKAP5Q14008 2032 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 C5orf60A6NFR6 353 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 TNFRSF10AO00220 468 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 BNIP3LO60238 219 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 SYNCRIPO60506 623 aaKnown RBP16.02■□□□□ 0.16
USP40-206ENST00000443711 ZNF821O75541 412 aaPredicted RBP16.02■□□□□ 0.16
USP40-206ENST00000443711 GCATO75600 419 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 IGSF6O95976 241 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 PDGFBP01127 241 aaPredicted RBP16.02■□□□□ 0.16
USP40-206ENST00000443711 HOXB2P14652 356 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 CES1P23141 567 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 CLCN5P51795 746 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 ITKQ08881 620 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 C9orf64Q5T6V5 341 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 TTC27Q6P3X3 843 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 SRLQ86TD4 932 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 ZNF567Q8N184 647 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 PGBD5Q8N414 524 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 CNTD1Q8N815 330 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 OR2AP1Q8NGE2 309 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 RTP4Q96DX8 246 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 TEKT5Q96M29 485 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 AGAP3Q96P47 875 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 IER2Q9BTL4 223 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 CEP41Q9BYV8 373 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 TM6SF2Q9BZW4 377 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 POLR1EQ9GZS1 481 aaKnown RBP16.02■□□□□ 0.16
USP40-206ENST00000443711 DDX47Q9H0S4 455 aaKnown RBP16.02■□□□□ 0.16
USP40-206ENST00000443711 MTG2Q9H4K7 406 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 PRSS16Q9NQE7 514 aa16.02■□□□□ 0.16
USP40-206ENST00000443711 KLHL8Q9P2G9 620 aaPredicted RBP16.02■□□□□ 0.16
USP40-206ENST00000443711 MUSKO15146 869 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 ZBTB24O43167 697 aaPredicted RBP16.01■□□□□ 0.15
USP40-206ENST00000443711 OPHN1O60890 802 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 ADAM23O75077 832 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 SIN3BO75182 1162 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 POP4O95707 220 aaKnown RBP16.01■□□□□ 0.15
USP40-206ENST00000443711 HLA-DQB2P05538 268 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 DCNP07585 359 aaKnown RBP16.01■□□□□ 0.15
USP40-206ENST00000443711 AOC1P19801 751 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 ACTN2P35609 894 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 GDF10P55107 478 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 RAD51Q06609 339 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 CAMK2GQ13555 558 aaPredicted RBP16.01■□□□□ 0.15
USP40-206ENST00000443711 MYLK3Q32MK0 819 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 RALGPS1Q5JS13 557 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 ANKRD20A2Q5SQ80 823 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 ATXN7L2Q5T6C5 722 aaPredicted RBP16.01■□□□□ 0.15
USP40-206ENST00000443711 ANKRD20A1Q5TYW2 823 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 ANKRD20A3Q5VUR7 823 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 CWF19L1Q69YN2 538 aaKnown RBP16.01■□□□□ 0.15
USP40-206ENST00000443711 ITPRIPL1Q6GPH6 555 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 PKN3Q6P5Z2 889 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 SYT13Q7L8C5 426 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 KLHL7Q8IXQ5 586 aa16.01■□□□□ 0.15
USP40-206ENST00000443711 RYBPQ8N488 228 aaPredicted RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms