RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 RNF157Q96PX1 679 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 SPRTNQ9H040 489 aaPredicted RBP17.37■□□□□ 0.37
PTPRF-209ENST00000438120 MFSD1Q9H3U5 465 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 RAB21Q9UL25 225 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 STARD13Q9Y3M8 1113 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 ASTN2O75129 1339 aaPredicted RBP17.37■□□□□ 0.37
PTPRF-209ENST00000438120 KLRC4O43908 158 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 ANXA5P08758 320 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 HK2P52789 917 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 IFNLR1Q8IU57 520 aaPredicted RBP17.37■□□□□ 0.37
PTPRF-209ENST00000438120 KCTD4Q8WVF5 259 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 MRPL48Q96GC5 212 aaKnown RBP17.37■□□□□ 0.37
PTPRF-209ENST00000438120 SLC25A23Q9BV35 468 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 PRDM12Q9H4Q4 367 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 CHKBQ9Y259 395 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 MRPS23Q9Y3D9 190 aaKnown RBP17.37■□□□□ 0.37
PTPRF-209ENST00000438120 GPR1P46091 355 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 FKBP1CQ5VVH2 108 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 SERPINA13PQ6UXR4 307 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 COLGALT2Q8IYK4 626 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 STAG3L4Q8TBR4 150 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 PPP1R16AQ96I34 528 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 MIR1-1HGQ9H1L0 117 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 DDX18Q9NVP1 670 aaKnown RBP17.37■□□□□ 0.37
PTPRF-209ENST00000438120 PCDHGC5Q9Y5F6 944 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 RCCD1A6NED2 376 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 VPS4BO75351 444 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 IL1BP01584 269 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 CAPN1P07384 714 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 EPORP19235 508 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 BRCC3P46736 316 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.37■□□□□ 0.37
PTPRF-209ENST00000438120 COX10Q12887 443 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 IRAK1BP1Q5VVH5 260 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 LRRC55Q6ZSA7 311 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 STK40Q8N2I9 435 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 OR6K2Q8NGY2 324 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 ACTRT2Q8TDY3 377 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 ARHGAP28Q9P2N2 729 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 PPIEQ9UNP9 301 aaKnown RBP17.37■□□□□ 0.37
PTPRF-209ENST00000438120 LYVE1Q9Y5Y7 322 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 CHURC1-FNTBB4DL54 471 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 KCNH1O95259 989 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 IFNA16P05015 189 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 SLC25A3Q00325 362 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 ABRQ12979 859 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 ATP1A4Q13733 1029 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 ECM1Q16610 540 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 WASHC2DQ5SRD0 308 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 C11orf88Q6PI97 169 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 FAM71AQ8IYT1 594 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 ALLCQ8N6M5 410 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 GPR156Q8NFN8 814 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 MRPL45Q9BRJ2 306 aaKnown RBP17.37■□□□□ 0.37
PTPRF-209ENST00000438120 CYLDQ9NQC7 956 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 SLC12A4Q9UP95 1085 aa17.37■□□□□ 0.37
PTPRF-209ENST00000438120 COL5A2P05997 1499 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-209ENST00000438120 CATP04040 527 aaKnown RBP17.36■□□□□ 0.37
PTPRF-209ENST00000438120 PPP1R26Q5T8A7 1209 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-209ENST00000438120 EMID1Q96A84 441 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-209ENST00000438120 C18orf25Q96B23 403 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-209ENST00000438120 COG5Q9UP83 839 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 ITGB5P18084 799 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 ATP4AP20648 1035 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 CTBP1Q13363 440 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 RIMS1Q86UR5 1692 aaKnown RBP17.36■□□□□ 0.37
PTPRF-209ENST00000438120 AMD1P17707 334 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 SLC44A4Q53GD3 710 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 LRRC74BQ6ZQY2 392 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 ANKRD52Q8NB46 1076 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 RAB14P61106 215 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 NAB1Q13506 487 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 PAGE2BQ5JRK9 111 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 ZNF544Q6NX49 715 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 CLVS1Q8IUQ0 354 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-209ENST00000438120 ZC3H7AQ8IWR0 971 aaKnown RBP17.36■□□□□ 0.37
PTPRF-209ENST00000438120 APOL4Q9BPW4 351 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 GNPTGQ9UJJ9 305 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 MST1RQ04912 1400 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 DEPDC5O75140 1603 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 TFEBP19484 476 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 HOXA10P31260 410 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-209ENST00000438120 TARBP2Q15633 366 aaKnown RBP17.36■□□□□ 0.37
PTPRF-209ENST00000438120 PREPLQ4J6C6 727 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-209ENST00000438120 DDI2Q5TDH0 399 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 ZNF276Q8N554 614 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 NAT16Q8N8M0 369 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 DGCR6LQ9BY27 220 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 PCDH12Q9NPG4 1184 aa17.36■□□□□ 0.37
PTPRF-209ENST00000438120 PRKAR2AP13861 404 aaKnown RBP17.35■□□□□ 0.37
PTPRF-209ENST00000438120 GRIA4P48058 902 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 CCDC149Q6ZUS6 474 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 DNAJB14Q8TBM8 379 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 C1QTNF7Q9BXJ2 289 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 STK39Q9UEW8 545 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 PAPSS1O43252 624 aaPredicted RBP17.35■□□□□ 0.37
PTPRF-209ENST00000438120 ADCY6O43306 1168 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 HLA-DQA2P01906 255 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 LBPP18428 481 aa17.35■□□□□ 0.37
PTPRF-209ENST00000438120 STX4Q12846 297 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms