RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SMAPO00193 183 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 AP3B1O00203 1094 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 GSRP00390 522 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 GLDCP23378 1020 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 PTPN3P26045 913 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 TIE1P35590 1138 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 SCNN1BP51168 640 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 GEMP55040 296 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 AP1S1P61966 158 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 BASP1P80723 227 aaKnown RBP10.26□□□□□ -0.77
CD44-207ENST00000425428 GPS1Q13098 491 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 PARP6Q2NL67 630 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 TEX35Q5T0J7 233 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 ASTLQ6HA08 431 aaPredicted RBP10.26□□□□□ -0.77
CD44-207ENST00000425428 C22orf39Q6P5X5 142 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 B4GALNT4Q76KP1 1039 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 ATG2BQ96BY7 2078 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 IFT43Q96FT9 208 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 LMLNQ96KR4 655 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 TEKT5Q96M29 485 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 IL12RB2Q99665 862 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 ATP13A3Q9H7F0 1226 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 FBRSQ9HAH7 460 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 PDFQ9HBH1 243 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 DYRK4Q9NR20 520 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 MUTYHQ9UIF7 546 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 INTS6Q9UL03 887 aaKnown RBP10.26□□□□□ -0.77
CD44-207ENST00000425428 FCF1Q9Y324 198 aaKnown RBP10.26□□□□□ -0.77
CD44-207ENST00000425428 ERI2A8K979 691 aaKnown RBP10.25□□□□□ -0.77
CD44-207ENST00000425428 PRRT4C9JH25 899 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 TRIM24O15164 1050 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 ATP9BO43861 1147 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 ZMPSTE24O75844 475 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 POP4O95707 220 aaKnown RBP10.25□□□□□ -0.77
CD44-207ENST00000425428 EPHX1P07099 455 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 SRCP12931 536 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 HNRNPLP14866 589 aaKnown RBP eCLIP10.25□□□□□ -0.77
CD44-207ENST00000425428 VAV1P15498 845 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 XPAP23025 273 aaPredicted RBP10.25□□□□□ -0.77
CD44-207ENST00000425428 SERPINA4P29622 427 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 NTSR1P30989 418 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 CSNK1DP48730 415 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 VPS41P49754 854 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 STARD6P59095 220 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 BCL2L1Q07817 233 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 SLC10A7Q0GE19 358 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 PTK6Q13882 451 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 ZNF234Q14588 700 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 GAB4Q2WGN9 574 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 C2orf27AQ580R0 203 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 CARD16Q5EG05 197 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 ARTNQ5T4W7 220 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 FAM46CQ5VWP2 391 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 PPP1R21Q6ZMI0 780 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 CEP128Q6ZU80 1094 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 LINC00523Q86TU6 105 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 JAMLQ86YT9 394 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 TP53INP2Q8IXH6 220 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 PLPP6Q8IY26 295 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 IFT20Q8IY31 132 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 ZNF567Q8N184 647 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 TEX26Q8N6G2 289 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 OR2AP1Q8NGE2 309 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 CCDC110Q8TBZ0 833 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 OR8D1Q8WZ84 308 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 RTP4Q96DX8 246 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 SNF8Q96H20 258 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 PPP1R16AQ96I34 528 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 LRIG1Q96JA1 1093 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 SLC25A51Q9H1U9 297 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 GBA3Q9H227 469 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 USP29Q9HBJ7 922 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 GLOD4Q9HC38 313 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 RAB6BQ9NRW1 208 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 VPS45Q9NRW7 570 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 THAP10Q9P2Z0 257 aaPredicted RBP10.25□□□□□ -0.77
CD44-207ENST00000425428 HECAQ9UBI9 543 aaPredicted RBP10.25□□□□□ -0.77
CD44-207ENST00000425428 ANKRD36A6QL64 1941 aa10.25□□□□□ -0.77
CD44-207ENST00000425428 FAM170BA6NMN3 283 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 C1QTNF3-AMACRE9PGA6 284 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 INSIG1O15503 277 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 TTI1O43156 1089 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 DCXO43602 365 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 EGFP01133 1207 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 PRNPP04156 253 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 TUBBP07437 444 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 CTSOP43234 321 aaPredicted RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 MAGEA9P43362 315 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 STK19P49842 368 aaPredicted RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 EPHB1P54762 984 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 POLR2LP62875 67 aaKnown RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 ZXDAP98168 799 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 CAV1Q03135 178 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 SIGLEC14Q08ET2 396 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 MPP3Q13368 585 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 TRIP13Q15645 432 aaPredicted RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 SRLQ86TD4 932 aa10.24□□□□□ -0.77
CD44-207ENST00000425428 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.24□□□□□ -0.77
CD44-207ENST00000425428 TSEN2Q8NCE0 465 aaKnown RBP10.24□□□□□ -0.77
CD44-207ENST00000425428 LRRN4Q8WUT4 740 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms