RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 VCPIP1Q96JH7 1222 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 C2orf49Q9BVC5 232 aaPredicted RBP8.27□□□□□ -1.09
VIM-202ENST00000421459 HDAC8Q9BY41 377 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 ABCG4Q9H172 646 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 SYNCQ9H7C4 482 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 ASCL3Q9NQ33 180 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 DYRK4Q9NR20 520 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 NDFIP2Q9NV92 336 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.27□□□□□ -1.09
VIM-202ENST00000421459 NLGN3Q9NZ94 848 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 APEX2Q9UBZ4 518 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 ZNF212Q9UDV6 495 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 HOOK1Q9UJC3 728 aaKnown RBP8.27□□□□□ -1.09
VIM-202ENST00000421459 DNAJC12Q9UKB3 198 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 SATB2Q9UPW6 733 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 FARP1Q9Y4F1 1045 aaPredicted RBP8.27□□□□□ -1.09
VIM-202ENST00000421459 FADS3Q9Y5Q0 445 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 TP53BP1Q12888 1972 aaPredicted RBP8.27□□□□□ -1.09
VIM-202ENST00000421459 ASXL3Q9C0F0 2248 aa8.27□□□□□ -1.09
VIM-202ENST00000421459 ASH1LQ9NR48 2969 aaKnown RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 A6NNZ2 444 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 GOLGA8SH3BPF8 625 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 AGRPO00253 132 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 GCATO75600 419 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 CSF2P04141 144 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 PRNPP04156 253 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 CELA2BP08218 269 aaPredicted RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 ALPPL2P10696 532 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 ADRB3P13945 408 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 OR1E1P30953 314 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 L1CAMP32004 1257 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 KRT9P35527 623 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 FLT3P36888 993 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 ACVRL1P37023 503 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 PPP1R2P41236 205 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 ABL2P42684 1182 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 LSSP48449 732 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 CCNHP51946 323 aaPredicted RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 NEK3P51956 506 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 PCBP4P57723 403 aaKnown RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 ARF5P84085 180 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 PTK2Q05397 1052 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 PDE1CQ14123 709 aaPredicted RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 CAMK4Q16566 473 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 EXOC3L4Q17RC7 722 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 ISXQ2M1V0 245 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 HSP90AA4PQ58FG1 418 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 CARD16Q5EG05 197 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 KIAA1614Q5VZ46 1190 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 DPY19L2P1Q6NXN4 242 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 GBP6Q6ZN66 633 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 PARS2Q7L3T8 475 aaKnown RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 ENOSF1Q7L5Y1 443 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 EFL1Q7Z2Z2 1120 aaKnown RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 SETD3Q86TU7 594 aaPredicted RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 FAM131BQ86XD5 332 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 XYLT1Q86Y38 959 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 DRC7Q8IY82 874 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 ELOA2Q8IYF1 753 aaPredicted RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 EMC1Q8N766 993 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 DCAF4L2Q8NA75 395 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 ZNF397Q8NF99 534 aaPredicted RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 KCNE4Q8WWG9 221 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 NT5C3BQ969T7 300 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 COL26A1Q96A83 441 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 PRR11Q96HE9 360 aaPredicted RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 CFAP57Q96MR6 1250 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 ZNF578Q96N58 590 aaPredicted RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 DEPDC7Q96QD5 511 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 PPP1R9BQ96SB3 815 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 KLF6Q99612 283 aaPredicted RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 HEPHQ9BQS7 1158 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 TM6SF2Q9BZW4 377 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 ZDHHC6Q9H6R6 413 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 POLR1BQ9H9Y6 1135 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 GPR27Q9NS67 375 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 IPO11Q9UI26 975 aaKnown RBP8.26□□□□□ -1.09
VIM-202ENST00000421459 HS3ST3A1Q9Y663 406 aa8.26□□□□□ -1.09
VIM-202ENST00000421459 MYLKQ15746 1914 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 IGLV3-10A0A075B6K4 115 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 SPTY2D1-AS1A0A0U1RR47 76 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 C16orf96A6NNT2 1141 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 FAM72CH0Y354 149 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 MUSKO15146 869 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 AQP9O43315 295 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 GJB6O95452 261 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 JUNDP17535 347 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 RECQLP46063 649 aaPredicted RBP8.25□□□□□ -1.09
VIM-202ENST00000421459 SERPINH1P50454 418 aaKnown RBP8.25□□□□□ -1.09
VIM-202ENST00000421459 ADKP55263 362 aaKnown RBP8.25□□□□□ -1.09
VIM-202ENST00000421459 TMPRSS3P57727 454 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 HNRNPKP61978 463 aaKnown RBP eCLIP8.25□□□□□ -1.09
VIM-202ENST00000421459 RPS21P63220 83 aaKnown RBP8.25□□□□□ -1.09
VIM-202ENST00000421459 BRMS1LQ5PSV4 323 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 ATXN7L2Q5T6C5 722 aaPredicted RBP8.25□□□□□ -1.09
VIM-202ENST00000421459 FAM102AQ5T9C2 384 aaPredicted RBP8.25□□□□□ -1.09
VIM-202ENST00000421459 FAM72AQ5TYM5 149 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 BROXQ5VW32 411 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 FAM72DQ6L9T8 149 aa8.25□□□□□ -1.09
VIM-202ENST00000421459 FOXR2Q6PJQ5 311 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms