RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 TIMM13Q9Y5L4 95 aaPredicted RBP10.02□□□□□ -0.81
SS18-203ENST00000415083 UNCXA6NJT0 531 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 FBP2O00757 339 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 MPOP05164 745 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 DNAJB3Q8WWF6 145 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 JADE3Q92613 823 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 TEKT5Q96M29 485 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 PPP1R10Q96QC0 940 aaKnown RBP10.02□□□□□ -0.81
SS18-203ENST00000415083 KIFC1Q9BW19 673 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 IL22Q9GZX6 179 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 IPPQ9Y573 584 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 CDY2AQ9Y6F7 541 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 CDY1Q9Y6F8 540 aa10.02□□□□□ -0.81
SS18-203ENST00000415083 C7orf72A4D263 438 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 SDHDO14521 159 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 TREHO43280 583 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 LRIG2O94898 1065 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 SERPINB6P35237 376 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 CHRNA4P43681 627 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 SNX17Q15036 470 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 LIPMQ5VYY2 423 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 METTL21CQ5VZV1 264 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 ESRP1Q6NXG1 681 aaKnown RBP10.01□□□□□ -0.81
SS18-203ENST00000415083 NOTUMQ6P988 496 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 ANKRD13AQ8IZ07 590 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 SHCBP1Q8NEM2 672 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 NTAN1Q96AB6 310 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 FERMT1Q9BQL6 677 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 SNX25Q9H3E2 840 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 COPS7BQ9H9Q2 264 aaPredicted RBP10.01□□□□□ -0.81
SS18-203ENST00000415083 SPON1Q9HCB6 807 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 ZBTB26Q9HCK0 441 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 VPS28Q9UK41 221 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 RAP2CQ9Y3L5 183 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 PCDHGA7Q9Y5G6 932 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 RGSL1A5PLK6 1076 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 HDAC3O15379 428 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 TAF6P49848 677 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 RPL14P50914 215 aaKnown RBP10.01□□□□□ -0.81
SS18-203ENST00000415083 MED21Q13503 144 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 ADGRE1Q14246 886 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 PPP1R3AQ16821 1122 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 DUSP28Q4G0W2 176 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 C6orf52Q5T4I8 152 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 C6orf163Q5TEZ5 329 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 PM20D1Q6GTS8 502 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 USP33Q8TEY7 942 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 PCED1BQ96HM7 432 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 SENP6Q9GZR1 1112 aaPredicted RBP10.01□□□□□ -0.81
SS18-203ENST00000415083 BRD8Q9H0E9 1235 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 RNF11Q9Y3C5 154 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 JCHAINP01591 159 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 ZNF26P17031 533 aaPredicted RBP10.01□□□□□ -0.81
SS18-203ENST00000415083 SAT1P21673 171 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 PCSK6P29122 969 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 EPHX2P34913 555 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 ADRA1AP35348 466 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 KCNC1P48547 511 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 CHN2P52757 468 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 C1QTNF8P60827 252 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 MMEL1Q495T6 779 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 PABPC1LQ4VXU2 614 aaKnown RBP10.01□□□□□ -0.81
SS18-203ENST00000415083 LRRC8EQ6NSJ5 796 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 GK5Q6ZS86 529 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 CNTN4Q8IWV2 1026 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 PGAP3Q96FM1 320 aaPredicted RBP10.01□□□□□ -0.81
SS18-203ENST00000415083 TASP1Q9H6P5 420 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 IGSF5Q9NSI5 407 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 CLIC5Q9NZA1 410 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 XPR1Q9UBH6 696 aa10.01□□□□□ -0.81
SS18-203ENST00000415083 RUVBL2Q9Y230 463 aaKnown RBP10.01□□□□□ -0.81
SS18-203ENST00000415083 PIN4Q9Y237 131 aaKnown RBP10.01□□□□□ -0.81
SS18-203ENST00000415083 UBFD1O14562 309 aaKnown RBP10□□□□□ -0.81
SS18-203ENST00000415083 PMLP29590 882 aa10□□□□□ -0.81
SS18-203ENST00000415083 IREB2P48200 963 aaKnown RBP10□□□□□ -0.81
SS18-203ENST00000415083 RPS6KA3P51812 740 aa10□□□□□ -0.81
SS18-203ENST00000415083 XIAPP98170 497 aa10□□□□□ -0.81
SS18-203ENST00000415083 APOFQ13790 326 aa10□□□□□ -0.81
SS18-203ENST00000415083 RBM20Q5T481 1227 aaKnown RBP10□□□□□ -0.81
SS18-203ENST00000415083 TMEM207Q6UWW9 146 aa10□□□□□ -0.81
SS18-203ENST00000415083 PTAR1Q7Z6K3 402 aaPredicted RBP10□□□□□ -0.81
SS18-203ENST00000415083 DNAAF3Q8N9W5 541 aa10□□□□□ -0.81
SS18-203ENST00000415083 BHLHE22Q8NFJ8 381 aaPredicted RBP10□□□□□ -0.81
SS18-203ENST00000415083 MAML3Q96JK9 1138 aa10□□□□□ -0.81
SS18-203ENST00000415083 ZNF512Q96ME7 567 aaPredicted RBP10□□□□□ -0.81
SS18-203ENST00000415083 OLFM1Q99784 485 aa10□□□□□ -0.81
SS18-203ENST00000415083 COLEC11Q9BWP8 271 aa10□□□□□ -0.81
SS18-203ENST00000415083 TMLHEQ9NVH6 421 aa10□□□□□ -0.81
SS18-203ENST00000415083 DTNAQ9Y4J8 743 aa10□□□□□ -0.81
SS18-203ENST00000415083 DOCK4Q8N1I0 1966 aa10□□□□□ -0.81
SS18-203ENST00000415083 PLOD2O00469 737 aa10□□□□□ -0.81
SS18-203ENST00000415083 NCAM1P13591 858 aa10□□□□□ -0.81
SS18-203ENST00000415083 HCAR3P49019 387 aa10□□□□□ -0.81
SS18-203ENST00000415083 CSE1LP55060 971 aaKnown RBP10□□□□□ -0.81
SS18-203ENST00000415083 PDCD2Q16342 344 aaPredicted RBP10□□□□□ -0.81
SS18-203ENST00000415083 MYLK3Q32MK0 819 aa10□□□□□ -0.81
SS18-203ENST00000415083 USP41Q3LFD5 358 aa10□□□□□ -0.81
SS18-203ENST00000415083 HMBOX1Q6NT76 420 aa10□□□□□ -0.81
SS18-203ENST00000415083 MS4A4AQ96JQ5 239 aa10□□□□□ -0.81
SS18-203ENST00000415083 DNAJC1Q96KC8 554 aaKnown RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms