RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 CXCL14O95715 111 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 SERPINE1P05121 402 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 CSH1P0DML2 217 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 CSH2P0DML3 217 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 ITGALP20701 1170 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 PPP3CCP48454 512 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 PLPP4Q5VZY2 271 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 OLFML1Q6UWY5 402 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 TMEM110Q86TL2 294 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 EFCAB3Q8N7B9 438 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 PPP2R3CQ969Q6 453 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 SLC4A5Q9BY07 1137 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 MIOSQ9NXC5 875 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-204ENST00000412568 TAGLN3Q9UI15 199 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 FBXO5Q9UKT4 447 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 ARHGAP26Q9UNA1 814 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 ANKRD36CQ5JPF3 1778 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 SCN9AQ15858 1988 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 IGKV6-21A0A0C4DH24 114 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 E9PAM4 449 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 PRPF4O43172 522 aaKnown RBP eCLIP11.33□□□□□ -0.61e-6■■■■□ 22.4
PTPRF-204ENST00000412568 SEC24DO94855 1032 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-204ENST00000412568 KRT16P08779 473 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 VHLP40337 213 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 DSC2Q02487 901 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 C15orf39Q6ZRI6 1047 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 CRYBG2Q8N1P7 616 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 MPP5Q8N3R9 675 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 FITM2Q8N6M3 262 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 SLC35B2Q8TB61 432 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 ZIC5Q96T25 663 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 BTBD10Q9BSF8 475 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 PCDHB8Q9UN66 801 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 ARHGAP10A1A4S6 786 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 BTN3A1O00481 513 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 ZNF197O14709 1029 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 PDE5AO76074 875 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 CYP3A5P20815 502 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 WARSP23381 471 aaKnown RBP11.33□□□□□ -0.6
PTPRF-204ENST00000412568 CDH13P55290 713 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 NCALDP61601 193 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 SEMG2Q02383 582 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 USP4Q13107 963 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 AGKQ53H12 422 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 RHBDF2Q6PJF5 856 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 SCIMPQ6UWF3 145 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 PACS1Q6VY07 963 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 SPPL2BQ8TCT7 592 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 STK32AQ8WU08 396 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 CD101Q93033 1021 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 HIC2Q96JB3 615 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 TCF7L2Q9NQB0 619 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 DNAJB4Q9UDY4 337 aa11.33□□□□□ -0.6
PTPRF-204ENST00000412568 CXCR3P49682 368 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 BCL2L1Q07817 233 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 PFKFB4Q16877 469 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 RNF43Q68DV7 783 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 ANKS1BQ7Z6G8 1248 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 SMOQ99835 787 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 GLOD4Q9HC38 313 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 CRTAC1Q9NQ79 661 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 CNTN3Q9P232 1028 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 LZTS1Q9Y250 596 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 APOA4P06727 396 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 HNRNPLP14866 589 aaKnown RBP eCLIP11.32□□□□□ -0.6
PTPRF-204ENST00000412568 GJA1P17302 382 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 SLC20A2Q08357 652 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 C16orf87Q6PH81 154 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 FIBCD1Q8N539 461 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 ACOX2Q99424 681 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 ZDHHC6Q9H6R6 413 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 SNX15Q9NRS6 342 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 SLC25A13Q9UJS0 675 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 PCDHGC4Q9Y5F7 938 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 SRCAPQ6ZRS2 3230 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 OR6C75A6NL08 312 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 ENTPD5O75356 428 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 ZNF865P0CJ78 1059 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-204ENST00000412568 SLC25A11Q02978 314 aaKnown RBP11.32□□□□□ -0.6
PTPRF-204ENST00000412568 ENPEPQ07075 957 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 DLG2Q15700 870 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 MSS51Q4VC12 460 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 VSTM1Q6UX27 236 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 AGMOQ6ZNB7 445 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 DEFB107AQ8IZN7 70 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 PSMG2Q969U7 264 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 DACT3Q96B18 629 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-204ENST00000412568 CCDC167Q9P0B6 97 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 SLC45A1Q9Y2W3 748 aa11.32□□□□□ -0.6
PTPRF-204ENST00000412568 AKAP10O43572 662 aa11.31□□□□□ -0.6
PTPRF-204ENST00000412568 C1RP00736 705 aa11.31□□□□□ -0.6
PTPRF-204ENST00000412568 RBP1P09455 135 aa11.31□□□□□ -0.6
PTPRF-204ENST00000412568 CORO1AP31146 461 aaKnown RBP11.31□□□□□ -0.6
PTPRF-204ENST00000412568 XRCC4Q13426 336 aa11.31□□□□□ -0.6
PTPRF-204ENST00000412568 MAPRE2Q15555 327 aa11.31□□□□□ -0.6
PTPRF-204ENST00000412568 TCHHL1Q5QJ38 904 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-204ENST00000412568 RARS2Q5T160 578 aaKnown RBP11.31□□□□□ -0.6
PTPRF-204ENST00000412568 DET1Q7L5Y6 550 aa11.31□□□□□ -0.6
PTPRF-204ENST00000412568 C11orf96Q7Z7L8 435 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms