RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 C10orf107Q8IVU9 208 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 CNTN4Q8IWV2 1026 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 PPP1R14CQ8TAE6 165 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 PSMG2Q969U7 264 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 GPR22Q99680 433 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 TTLL2Q9BWV7 592 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 ARNT2Q9HBZ2 717 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 HBS1LQ9Y450 684 aaKnown RBP20.41■□□□□ 0.86
USP39-204ENST00000409766 E2F8A0AVK6 867 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 TRAFD1O14545 582 aaPredicted RBP20.41■□□□□ 0.86
USP39-204ENST00000409766 ATP6V1G2O95670 118 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 ARNTP27540 789 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 HADHAP40939 763 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 NADSYN1Q6IA69 706 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 SLC8B1Q6J4K2 584 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 KDELC2Q7Z4H8 507 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 TEX26Q8N6G2 289 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 UTP4Q969X6 686 aaKnown RBP20.41■□□□□ 0.86
USP39-204ENST00000409766 RPRD1AQ96P16 312 aaPredicted RBP20.41■□□□□ 0.86
USP39-204ENST00000409766 DEFB118Q96PH6 123 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 KLHL5Q96PQ7 755 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 ATXN3LQ9H3M9 355 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 HIPK3Q9H422 1215 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 RHOJQ9H4E5 214 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 NT5MQ9NPB1 228 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 LNPEPQ9UIQ6 1025 aa20.41■□□□□ 0.86
USP39-204ENST00000409766 MICAL3Q7RTP6 2002 aa20.4■□□□□ 0.86
USP39-204ENST00000409766 HAUS5O94927 633 aa20.4■□□□□ 0.86
USP39-204ENST00000409766 VAPBO95292 243 aa20.4■□□□□ 0.86
USP39-204ENST00000409766 MYCP01106 439 aaPredicted RBP20.4■□□□□ 0.86
USP39-204ENST00000409766 C2P06681 752 aa20.4■□□□□ 0.86
USP39-204ENST00000409766 GABRB3P28472 473 aa20.4■□□□□ 0.86
USP39-204ENST00000409766 CHRNA4P43681 627 aa20.4■□□□□ 0.86
USP39-204ENST00000409766 RASSF2P50749 326 aa20.4■□□□□ 0.86
USP39-204ENST00000409766 ZBTB16Q05516 673 aa20.4■□□□□ 0.86
USP39-204ENST00000409766 TNK2Q07912 1038 aa20.4■□□□□ 0.86
USP39-204ENST00000409766 GRM3Q14832 879 aa20.4■□□□□ 0.86
USP39-204ENST00000409766 SP110Q9HB58 689 aa20.4■□□□□ 0.86
USP39-204ENST00000409766 ATP13A1Q9HD20 1204 aa20.4■□□□□ 0.86
USP39-204ENST00000409766 TREX1Q9NSU2 369 aa20.4■□□□□ 0.86
USP39-204ENST00000409766 MARCOQ9UEW3 520 aaPredicted RBP20.4■□□□□ 0.86
USP39-204ENST00000409766 ITM2AO43736 263 aa20.39■□□□□ 0.86
USP39-204ENST00000409766 AHSGP02765 367 aa20.39■□□□□ 0.86
USP39-204ENST00000409766 SERPINE1P05121 402 aa20.39■□□□□ 0.86
USP39-204ENST00000409766 KITP10721 976 aa20.39■□□□□ 0.86
USP39-204ENST00000409766 SLC1A6P48664 564 aa20.39■□□□□ 0.86
USP39-204ENST00000409766 KPNA1P52294 538 aaPredicted RBP20.39■□□□□ 0.86
USP39-204ENST00000409766 IRF9Q00978 393 aa20.39■□□□□ 0.86
USP39-204ENST00000409766 PABPC5Q96DU9 382 aaKnown RBP20.39■□□□□ 0.86
USP39-204ENST00000409766 MYEOVQ96EZ4 313 aa20.39■□□□□ 0.86
USP39-204ENST00000409766 PRR11Q96HE9 360 aaPredicted RBP20.39■□□□□ 0.86
USP39-204ENST00000409766 VPS45Q9NRW7 570 aa20.39■□□□□ 0.86
USP39-204ENST00000409766 MTRRQ9UBK8 725 aa20.39■□□□□ 0.86
USP39-204ENST00000409766 SLC2A6Q9UGQ3 507 aa20.39■□□□□ 0.86
USP39-204ENST00000409766 STK38LQ9Y2H1 464 aa20.39■□□□□ 0.86
USP39-204ENST00000409766 HNRNPCL1O60812 293 aaKnown RBP20.39■□□□□ 0.85
USP39-204ENST00000409766 RAMP2O60895 175 aa20.39■□□□□ 0.85
USP39-204ENST00000409766 MMP2P08253 660 aa20.39■□□□□ 0.85
USP39-204ENST00000409766 CPA3P15088 417 aa20.39■□□□□ 0.85
USP39-204ENST00000409766 GRK2P25098 689 aa20.39■□□□□ 0.85
USP39-204ENST00000409766 ALDH7A1P49419 539 aaKnown RBP20.39■□□□□ 0.85
USP39-204ENST00000409766 MAXP61244 160 aa20.39■□□□□ 0.85
USP39-204ENST00000409766 POLD3Q15054 466 aaPredicted RBP20.39■□□□□ 0.85
USP39-204ENST00000409766 CNGA3Q16281 694 aa20.39■□□□□ 0.85
USP39-204ENST00000409766 PCSK7Q16549 785 aa20.39■□□□□ 0.85
USP39-204ENST00000409766 PARP15Q460N3 678 aa20.39■□□□□ 0.85
USP39-204ENST00000409766 CIR1Q86X95 450 aaPredicted RBP20.39■□□□□ 0.85
USP39-204ENST00000409766 OR6Y1Q8NGX8 325 aa20.39■□□□□ 0.85
USP39-204ENST00000409766 RAB3IPQ96QF0 476 aaPredicted RBP20.39■□□□□ 0.85
USP39-204ENST00000409766 OGDHLQ9ULD0 1010 aa20.39■□□□□ 0.85
USP39-204ENST00000409766 SIN3BO75182 1162 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 LYPLA1O75608 230 aaPredicted RBP20.38■□□□□ 0.85
USP39-204ENST00000409766 KCNQ1P51787 676 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 AQP5P55064 265 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 MTA1Q13330 715 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 SERINC3Q13530 473 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 IHHQ14623 411 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 UGP2Q16851 508 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 USP41Q3LFD5 358 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 ARMC3Q5W041 872 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 FAM91A1Q658Y4 838 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 ANKRD33Q7Z3H0 272 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 TTC7BQ86TV6 843 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 ALYREFQ86V81 257 aaKnown RBP20.38■□□□□ 0.85
USP39-204ENST00000409766 TNS4Q8IZW8 715 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.38■□□□□ 0.85
USP39-204ENST00000409766 PTCD3Q96EY7 689 aaKnown RBP20.38■□□□□ 0.85
USP39-204ENST00000409766 CEP295NLQ96MC4 621 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 TUBB6Q9BUF5 446 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 VN1R3Q9BXE9 311 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 WWP1Q9H0M0 922 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 ARL8BQ9NVJ2 186 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 SLC39A10Q9ULF5 831 aa20.38■□□□□ 0.85
USP39-204ENST00000409766 FCHO1O14526 889 aa20.37■□□□□ 0.85
USP39-204ENST00000409766 RPL17P18621 184 aaKnown RBP20.37■□□□□ 0.85
USP39-204ENST00000409766 TACR2P21452 398 aa20.37■□□□□ 0.85
USP39-204ENST00000409766 OR1E1P30953 314 aa20.37■□□□□ 0.85
USP39-204ENST00000409766 CD86P42081 329 aa20.37■□□□□ 0.85
USP39-204ENST00000409766 MAPKAPK2P49137 400 aa20.37■□□□□ 0.85
USP39-204ENST00000409766 ATN1P54259 1190 aaPredicted RBP20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms