RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ANPEPP15144 967 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 CCNFP41002 786 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 MRPS22P82650 360 aaKnown RBP13.58□□□□□ -0.24
VPS54-203ENST00000409558 PRKCZQ05513 592 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 SLC10A7Q0GE19 358 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 GALNT3Q14435 633 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 PAFAH1B3Q15102 231 aaKnown RBP13.58□□□□□ -0.24
VPS54-203ENST00000409558 UPP1Q16831 310 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 ALFQ53S48 1182 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 THEM5Q8N1Q8 247 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 GTF3C2Q8WUA4 911 aaPredicted RBP13.58□□□□□ -0.24
VPS54-203ENST00000409558 CDRT15Q96T59 188 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 TRIM8Q9BZR9 551 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 SARS2Q9NP81 518 aaKnown RBP13.58□□□□□ -0.24
VPS54-203ENST00000409558 OSER1Q9NX31 292 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 GABRDO14764 452 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 BNIP3LO60238 219 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 HAPLN1P10915 354 aaPredicted RBP13.58□□□□□ -0.24
VPS54-203ENST00000409558 RPL17P18621 184 aaKnown RBP13.58□□□□□ -0.24
VPS54-203ENST00000409558 SLC1A2P43004 574 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 PPIDQ08752 370 aaKnown RBP13.58□□□□□ -0.24
VPS54-203ENST00000409558 CLEC6AQ6EIG7 209 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 TAF2Q6P1X5 1199 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 CCNJLQ8IV13 435 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 SREK1Q8WXA9 508 aaKnown RBP13.58□□□□□ -0.24
VPS54-203ENST00000409558 ESAMQ96AP7 390 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 SLC2A13Q96QE2 648 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 MTG1Q9BT17 334 aaPredicted RBP13.58□□□□□ -0.24
VPS54-203ENST00000409558 MAF1Q9H063 256 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 ARHGEF38Q9NXL2 777 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 CDH9Q9ULB4 789 aa13.58□□□□□ -0.24
VPS54-203ENST00000409558 SMIM24O75264 130 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 SNNO75324 88 aaPredicted RBP13.57□□□□□ -0.24
VPS54-203ENST00000409558 TADA2AO75478 443 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 KLC1Q07866 573 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 PITRM1Q5JRX3 1037 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 RPAINQ86UA6 219 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 PSMG2Q969U7 264 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 RCN3Q96D15 328 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 ILKAPQ9H0C8 392 aaPredicted RBP13.57□□□□□ -0.24
VPS54-203ENST00000409558 GMIPQ9P107 970 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 GTF2IRD1Q9UHL9 959 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 NELFEP18615 380 aaKnown RBP13.57□□□□□ -0.24
VPS54-203ENST00000409558 CASP2P42575 452 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 PRAMEP78395 509 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 ADAM17P78536 824 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 PLIN5Q00G26 463 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 INTS6LQ5JSJ4 861 aaKnown RBP13.57□□□□□ -0.24
VPS54-203ENST00000409558 SH3RF2Q8TEC5 729 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 FAXDC2Q96IV6 333 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 TUBB6Q9BUF5 446 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 PIDD1Q9HB75 910 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 IGSF9Q9P2J2 1179 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 ACOT9Q9Y305 439 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 CAPN14A8MX76 684 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 LSM12Q3MHD2 195 aaKnown RBP13.57□□□□□ -0.24
VPS54-203ENST00000409558 MORN1Q5T089 497 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 SCIMPQ6UWF3 145 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 CCDC167Q9P0B6 97 aa13.57□□□□□ -0.24
VPS54-203ENST00000409558 CCDC160A6NGH7 325 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 FBXO21O94952 628 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 GSTA2P09210 222 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 SKIP12755 728 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 RAG1P15918 1043 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 STMN1P16949 149 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 FGFR3P22607 806 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 WNT3AP56704 352 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 SLC12A1Q13621 1099 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 MMEL1Q495T6 779 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 FAM171A1Q5VUB5 890 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.56□□□□□ -0.24
VPS54-203ENST00000409558 PPHLN1Q8NEY8 458 aaKnown RBP13.56□□□□□ -0.24
VPS54-203ENST00000409558 POMKQ9H5K3 350 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 PTGDR2Q9Y5Y4 395 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 MYOCOSA0A1B0GUC4 107 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 SLC12A8A0AV02 714 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 GPR182O15218 404 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 DDHD2O94830 711 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 PEX2P28328 305 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 AP2B1P63010 937 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 ART3Q13508 389 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 HMCESQ96FZ2 354 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 GCNAQ96QF7 691 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 ALG9Q9H6U8 611 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 LRRC14BA6NHZ5 514 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 A8MX80 341 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 TM7SF2O76062 418 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 SUPT7LO94864 414 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 CCDC166P0CW27 439 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 TFEBP19484 476 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 SEL1L3Q68CR1 1132 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 C4orf22Q6V702 233 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 CYP2R1Q6VVX0 501 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 SPATA24Q86W54 205 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 RSPH1Q8WYR4 309 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 SLC39A3Q9BRY0 314 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 UTP6Q9NYH9 597 aaKnown RBP13.56□□□□□ -0.24
VPS54-203ENST00000409558 DSEQ9UL01 958 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 FAM50BQ9Y247 325 aa13.56□□□□□ -0.24
VPS54-203ENST00000409558 COMMD10Q9Y6G5 202 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms