RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 KCNT1Q5JUK3 1230 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 RABGAP1LQ5R372 815 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 STPG1Q5TH74 334 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 DCAF12L1Q5VU92 463 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 AFMIDQ63HM1 303 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 GRAMD4Q6IC98 578 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 ZNF783Q6ZMS7 281 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 RFX8Q6ZV50 586 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 ANKS1BQ7Z6G8 1248 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 SETD3Q86TU7 594 aaPredicted RBP9.42□□□□□ -0.9
VPS53-203ENST00000401468 LGI2Q8N0V4 545 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 ZNF366Q8N895 744 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 ZNF557Q8N988 423 aaPredicted RBP9.42□□□□□ -0.9
VPS53-203ENST00000401468 FIBINQ8TAL6 211 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 RAPGEF5Q92565 580 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 TBC1D31Q96DN5 1066 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 TMA16Q96EY4 203 aaKnown RBP9.42□□□□□ -0.9
VPS53-203ENST00000401468 CSPG4P5Q96PW8 444 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 ZYG11BQ9C0D3 744 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 KLC2Q9H0B6 622 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 SIK2Q9H0K1 926 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 DHX35Q9H5Z1 703 aaKnown RBP9.42□□□□□ -0.9
VPS53-203ENST00000401468 TMEM74BQ9NUR3 256 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 GPATCH2LQ9NWQ4 482 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 DEC1Q9P2X7 70 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 VANGL2Q9ULK5 521 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.42□□□□□ -0.9
VPS53-203ENST00000401468 OR51B4Q9Y5P0 310 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 SNX10Q9Y5X0 201 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 ANKRD36A6QL64 1941 aa9.42□□□□□ -0.9
VPS53-203ENST00000401468 CABIN1Q9Y6J0 2220 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 C4orf47A7E2U8 309 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 KIF5CO60282 957 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 TBL1XO60907 577 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 CNTN5O94779 1100 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 LUC7L3O95232 432 aaKnown RBP9.41□□□□□ -0.9
VPS53-203ENST00000401468 FTCDO95954 541 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 CD48P09326 243 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 HOXB2P14652 356 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 GOT1P17174 413 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 GABRG2P18507 467 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 SPINK2P20155 84 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 HOXA6P31267 233 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 CNR2P34972 360 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 GRIA2P42262 883 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 MAPK8P45983 427 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 MAPKAPK2P49137 400 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 PLK1P53350 603 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 NAP1L1P55209 391 aaKnown RBP9.41□□□□□ -0.9
VPS53-203ENST00000401468 CDH6P55285 790 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 RWDD2BP57060 319 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 RELBQ01201 579 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 PTSQ03393 145 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 SLC12A1Q13621 1099 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 ELF2Q15723 593 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 GEN1Q17RS7 908 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 ANKRD20A8PQ5CZ79 823 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 SLC9A4Q6AI14 798 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 CXorf57Q6NSI4 855 aaKnown RBP9.41□□□□□ -0.9
VPS53-203ENST00000401468 LRRC31Q6UY01 552 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 MAP7D3Q8IWC1 876 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 RCOR2Q8IZ40 523 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 UMODL1-AS1Q8N2C9 162 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 CAMKK1Q8N5S9 505 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 PQLC3Q8N755 202 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 RTL3Q8N8U3 475 aaKnown RBP9.41□□□□□ -0.9
VPS53-203ENST00000401468 TERB1Q8NA31 727 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 PCDH19Q8TAB3 1148 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 HSPH1Q92598 858 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 TRIM44Q96DX7 344 aaPredicted RBP9.41□□□□□ -0.9
VPS53-203ENST00000401468 ALG14Q96F25 216 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 RBM41Q96IZ5 413 aaKnown RBP9.41□□□□□ -0.9
VPS53-203ENST00000401468 RPRD1AQ96P16 312 aaPredicted RBP9.41□□□□□ -0.9
VPS53-203ENST00000401468 RNF157Q96PX1 679 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 EDEM2Q9BV94 578 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 CARD9Q9H257 536 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 NOL6Q9H6R4 1146 aaKnown RBP9.41□□□□□ -0.9
VPS53-203ENST00000401468 IGSF5Q9NSI5 407 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 PACSIN2Q9UNF0 486 aaPredicted RBP9.41□□□□□ -0.9
VPS53-203ENST00000401468 CYP8B1Q9UNU6 501 aa9.41□□□□□ -0.9
VPS53-203ENST00000401468 hCG_1818297A0A087WSY0 165 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 LNP1A1A4G5 178 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 ILVBLA1L0T0 632 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 BCLAF3A2AJT9 711 aaKnown RBP9.4□□□□□ -0.9
VPS53-203ENST00000401468 PRR5-ARHGAP8B1AHC4 643 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 H3BRJ5 948 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 EEF2KO00418 725 aaKnown RBP9.4□□□□□ -0.9
VPS53-203ENST00000401468 CES2O00748 559 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 SLC30A4O14863 429 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 ZRANB2O95218 330 aaKnown RBP eCLIP9.4□□□□□ -0.9
VPS53-203ENST00000401468 TOP3BO95985 862 aaKnown RBP9.4□□□□□ -0.9
VPS53-203ENST00000401468 CYBBP04839 570 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 ZNF806P0C7X5 589 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 PYGMP11217 842 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 HLA-EP13747 358 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 PRLRP16471 622 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 ERCC2P18074 760 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 ITPKAP23677 461 aa9.4□□□□□ -0.9
VPS53-203ENST00000401468 MSNP26038 577 aaKnown RBP9.4□□□□□ -0.9
VPS53-203ENST00000401468 MAOBP27338 520 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms