RNA–Protein interactions for RNA: ENST00000397117.5

SEC13-209, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 5 BASIC

Gene SEC13, Length 1,603 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-209ENST00000397117 ZNF77Q15935 545 aa13.52□□□□□ -0.25
SEC13-209ENST00000397117 EML3Q32P44 896 aa13.52□□□□□ -0.25
SEC13-209ENST00000397117 ARTNQ5T4W7 220 aa13.52□□□□□ -0.25
SEC13-209ENST00000397117 CIR1Q86X95 450 aaPredicted RBP13.52□□□□□ -0.25
SEC13-209ENST00000397117 BBS7Q8IWZ6 715 aa13.52□□□□□ -0.25
SEC13-209ENST00000397117 KDF1Q8NAX2 398 aaPredicted RBP13.52□□□□□ -0.25
SEC13-209ENST00000397117 NETO2Q8NC67 525 aa13.52□□□□□ -0.25
SEC13-209ENST00000397117 HJURPQ8NCD3 748 aaPredicted RBP13.52□□□□□ -0.25
SEC13-209ENST00000397117 IFT81Q8WYA0 676 aa13.52□□□□□ -0.25
SEC13-209ENST00000397117 ACDQ96AP0 544 aa13.52□□□□□ -0.25
SEC13-209ENST00000397117 LGMNQ99538 433 aa13.52□□□□□ -0.25
SEC13-209ENST00000397117 DUS2Q9NX74 493 aaKnown RBP13.52□□□□□ -0.25
SEC13-209ENST00000397117 ESYT3A0FGR9 886 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 LNP1A1A4G5 178 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 ZSCAN5CA6NGD5 496 aaPredicted RBP13.51□□□□□ -0.25
SEC13-209ENST00000397117 ZZEF1O43149 2961 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 RBL1P28749 1068 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 GARSP41250 739 aaKnown RBP13.51□□□□□ -0.25
SEC13-209ENST00000397117 RPS24P62847 133 aaKnown RBP13.51□□□□□ -0.25
SEC13-209ENST00000397117 USP4Q13107 963 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 KCTD19Q17RG1 926 aaPredicted RBP13.51□□□□□ -0.25
SEC13-209ENST00000397117 PMS2CLQ68D20 193 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 WDR93Q6P2C0 686 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 UNQ6494/PRO21346Q6UXR6 183 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 UMODL1-AS1Q8N2C9 162 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 ATPAF2Q8N5M1 289 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 LRRN4Q8WUT4 740 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 ATP2A3Q93084 1043 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 TMA16Q96EY4 203 aaKnown RBP13.51□□□□□ -0.25
SEC13-209ENST00000397117 MYEOVQ96EZ4 313 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 PRICKLE1Q96MT3 831 aaPredicted RBP13.51□□□□□ -0.25
SEC13-209ENST00000397117 TMEM121BQ9BXQ6 578 aaPredicted RBP13.51□□□□□ -0.25
SEC13-209ENST00000397117 DPH5Q9H2P9 285 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 PCDH9Q9HC56 1237 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 GDF3Q9NR23 364 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 FAM114A2Q9NRY5 505 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 NDFIP2Q9NV92 336 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 INVSQ9Y283 1065 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 WNT6Q9Y6F9 365 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 MYO18AQ92614 2054 aaKnown RBP13.51□□□□□ -0.25
SEC13-209ENST00000397117 MYOFQ9NZM1 2061 aa13.51□□□□□ -0.25
SEC13-209ENST00000397117 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.5□□□□□ -0.25
SEC13-209ENST00000397117 A0A1B0GVM2 712 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 TCAF2A6NFQ2 919 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 ARHGAP42A6NI28 874 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 CDX4O14627 284 aaPredicted RBP13.5□□□□□ -0.25
SEC13-209ENST00000397117 RAMP2O60895 175 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 CYBBP04839 570 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 TCF3P15923 654 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 VPS41P49754 854 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 DGKEP52429 567 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 GDF10P55107 478 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 ZNF177Q13360 481 aaPredicted RBP13.5□□□□□ -0.25
SEC13-209ENST00000397117 CUL1Q13616 776 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 PRKD1Q15139 912 aaPredicted RBP13.5□□□□□ -0.25
SEC13-209ENST00000397117 C6orf118Q5T5N4 469 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 DUPD1Q68J44 220 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 CHST9Q7L1S5 443 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 RASSF3Q86WH2 238 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 ZNF354CQ86Y25 554 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 LRRC49Q8IUZ0 686 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 CCDC117Q8IWD4 279 aaPredicted RBP13.5□□□□□ -0.25
SEC13-209ENST00000397117 TP53INP2Q8IXH6 220 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 FAM217AQ8IXS0 508 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 CPXM2Q8N436 756 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 USP33Q8TEY7 942 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 HTR3CQ8WXA8 447 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 HDAC11Q96DB2 347 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 SLC39A8Q9C0K1 460 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 KLC2Q9H0B6 622 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 LINC00597Q9H2U6 94 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 USP29Q9HBJ7 922 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 ARGLU1Q9NWB6 273 aaPredicted RBP13.5□□□□□ -0.25
SEC13-209ENST00000397117 SEPT10Q9P0V9 454 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 TBC1D14Q9P2M4 693 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 ZMIZ1Q9ULJ6 1067 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 SNX24Q9Y343 169 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 AKAP13Q12802 2813 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 TNRC6BQ9UPQ9 1833 aaKnown RBP13.5□□□□□ -0.25
SEC13-209ENST00000397117 SLC9A3R1O14745 358 aaPredicted RBP13.5□□□□□ -0.25
SEC13-209ENST00000397117 MTSS1O43312 755 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 TBL1XO60907 577 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 CEACAM1P13688 526 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 CSRP1P21291 193 aaKnown RBP13.5□□□□□ -0.25
SEC13-209ENST00000397117 IFNAR2P48551 515 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 SGSHP51688 502 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 VSNL1P62760 191 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 PPIDQ08752 370 aaKnown RBP13.5□□□□□ -0.25
SEC13-209ENST00000397117 GPS1Q13098 491 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 CALCOCO2Q13137 446 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 HLTFQ14527 1009 aaKnown RBP eCLIP13.5□□□□□ -0.25
SEC13-209ENST00000397117 POLD3Q15054 466 aaPredicted RBP13.5□□□□□ -0.25
SEC13-209ENST00000397117 PARP15Q460N3 678 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 MPPE1Q53F39 396 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 USP39Q53GS9 565 aaKnown RBP13.5□□□□□ -0.25
SEC13-209ENST00000397117 AFMIDQ63HM1 303 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 C11orf74Q86VG3 221 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 ARHGAP12Q8IWW6 846 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 TSTD1Q8NFU3 115 aa13.5□□□□□ -0.25
SEC13-209ENST00000397117 DDI1Q8WTU0 396 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms