RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ZMYND8Q9ULU4 1186 aaPredicted RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 PLAGL2Q9UPG8 496 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 IQSEC2Q5JU85 1478 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 TRBV23OR9-2A0A075B6M9 112 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 NT5C1B-RDH14C9J2C7 533 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 TAF4O00268 1085 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SLC28A1O00337 649 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 NFATC1O95644 943 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 LAG3P18627 525 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 NOS2P35228 1153 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SSR2P43308 183 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 ACTR3P61158 418 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 MYBPC2Q14324 1141 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 NR1I3Q14994 352 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 COLEC12Q5KU26 742 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 GPR158Q5T848 1215 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 ARMC3Q5W041 872 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SNX20Q7Z614 316 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SLC47A2Q86VL8 602 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 DAGLBQ8NCG7 672 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 GPR156Q8NFN8 814 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 HERVK_113Q902F9 699 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 RIPOR3Q96MK2 946 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 C6orf62Q9GZU0 229 aaPredicted RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 DPEP2Q9H4A9 486 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 PCDH9Q9HC56 1237 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 CCDC177Q9NQR7 707 aaPredicted RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 NECTIN3Q9NQS3 549 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 ERVK-11Q9UQG0 969 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 LRRC72A6NJI9 287 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 TMEM88BA6NKF7 163 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 F8VP50 259 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 CLOCKO15516 846 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SCGNO76038 276 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 PAEPP09466 180 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 GNSP15586 552 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 ACADSP16219 412 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 CDH3P22223 829 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 ADSLP30566 484 aaPredicted RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 CD52P31358 61 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 UGT1A5P35504 534 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 CHN2P52757 468 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SEC24CP53992 1094 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 PRKAA2P54646 552 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 MRPS35P82673 323 aaKnown RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 VGLL4Q14135 290 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 INO80DQ53TQ3 878 aaPredicted RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 SPANXN2Q5MJ10 180 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 STXBP5Q5T5C0 1151 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 APTXQ7Z2E3 356 aaKnown RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 DHFR2Q86XF0 187 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 ZCCHC7Q8N3Z6 543 aaKnown RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 OR14C36Q8NHC7 312 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 ITFG1Q8TB96 612 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 TATDN2Q93075 761 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 ZIM3Q96PE6 472 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SLC38A2Q96QD8 506 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 TMEM138Q9NPI0 162 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SEMA4BQ9NPR2 832 aaPredicted RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 TBC1D14Q9P2M4 693 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SLC24A2Q9UI40 661 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 RABGEF1Q9UJ41 708 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 PSMD13Q9UNM6 376 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 AP3M1Q9Y2T2 418 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 PCDHB11Q9Y5F2 797 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 FAM92AA1XBS5 289 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 PTGES3LE9PB15 166 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 ULK1O75385 1050 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 TCEA3O75764 348 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 MICAL2O94851 1124 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SERPINE1P05121 402 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 EPHX1P07099 455 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 PTPRAP18433 802 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 PGAM1P18669 254 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 IDSP22304 550 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 ELK3P41970 407 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SMIM11AP58511 58 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 FOXM1Q08050 763 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 SF1Q15637 639 aaKnown RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 PLEKHA7Q6IQ23 1121 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 POMZP3Q6PJE2 187 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 KLHL17Q6TDP4 642 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 RAD9BQ6WBX8 426 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 EIF3MQ7L2H7 374 aaKnown RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 ZDHHC13Q8IUH4 622 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 C7orf61Q8IZ16 206 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 TRMT2AQ8IZ69 625 aaKnown RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 OR5T3Q8NGG3 340 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 RP9Q8TA86 221 aaKnown RBP7.27□□□□□ -1.25
UPF2-203ENST00000397053 MDM1Q8TC05 714 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 APBB2Q92870 758 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 TMEM216Q9P0N5 145 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 CDH7Q9ULB5 785 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 ANGPT4Q9Y264 503 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 GIT1Q9Y2X7 761 aa7.27□□□□□ -1.25
UPF2-203ENST00000397053 ERVK-7P63135 1459 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 PNMA8CA0A1B0GUJ8 204 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 ABHD14A-ACY1A0A1B0GW23 586 aa7.26□□□□□ -1.25
UPF2-203ENST00000397053 WDR27A2RRH5 827 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms