RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 NOP2P46087 812 aaKnown RBP10.59□□□□□ -0.71
NEDD8-202ENST00000396828 CCR5P51681 352 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 PLK1P53350 603 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 NXPH1P58417 271 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 CNTN1Q12860 1018 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 AUHQ13825 339 aaKnown RBP10.59□□□□□ -0.71
NEDD8-202ENST00000396828 ARTNQ5T4W7 220 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 RNF219Q5W0B1 726 aaPredicted RBP10.59□□□□□ -0.71
NEDD8-202ENST00000396828 TBC1D3GQ6DHY5 549 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 TBC1D3CQ6IPX1 549 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 MON1BQ7L1V2 547 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 KANSL1Q7Z3B3 1105 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 CCDC117Q8IWD4 279 aaPredicted RBP10.59□□□□□ -0.71
NEDD8-202ENST00000396828 TBC1D3Q8IZP1 549 aaPredicted RBP10.59□□□□□ -0.71
NEDD8-202ENST00000396828 RFFLQ8WZ73 363 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 LRIG1Q96JA1 1093 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 CNDP2Q96KP4 475 aaKnown RBP10.59□□□□□ -0.71
NEDD8-202ENST00000396828 ALS2CR12Q96Q35 445 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 C11orf70Q9BRQ4 267 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 FEM1AQ9BSK4 669 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 LACRTQ9GZZ8 138 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 THAP2Q9H0W7 228 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 FAM204AQ9H8W3 233 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 MRPL47Q9HD33 250 aaKnown RBP10.59□□□□□ -0.71
NEDD8-202ENST00000396828 TMPRSS4Q9NRS4 437 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 DDIT4Q9NX09 232 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 MYO1AQ9UBC5 1043 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 DKK4Q9UBT3 224 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 CNOT8Q9UFF9 292 aaKnown RBP10.59□□□□□ -0.71
NEDD8-202ENST00000396828 VANGL2Q9ULK5 521 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 OR51B4Q9Y5P0 310 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 HS3ST4Q9Y661 456 aa10.59□□□□□ -0.71
NEDD8-202ENST00000396828 ASXL3Q9C0F0 2248 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 MACROD2A1Z1Q3 448 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 K7ERQ8 282 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 ENC1O14682 589 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 PAGE1O75459 146 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 CNTN5O94779 1100 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 LDOC1O95751 146 aaPredicted RBP10.58□□□□□ -0.72
NEDD8-202ENST00000396828 ADH1BP00325 375 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 ITGAVP06756 1048 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 CTSLP07711 333 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 EPHA8P29322 1005 aaPredicted RBP10.58□□□□□ -0.72
NEDD8-202ENST00000396828 ARHGAP25P42331 645 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 TAS2R38P59533 333 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 NME3Q13232 169 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 ELAVL3Q14576 367 aaKnown RBP10.58□□□□□ -0.72
NEDD8-202ENST00000396828 DLG2Q15700 870 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 ACCSLQ4AC99 568 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 AGBL4Q5VU57 503 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 OLFML1Q6UWY5 402 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 Q6ZVU0 165 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 DNAAF5Q86Y56 855 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 GALNT15Q8N3T1 639 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 ATP6V0D2Q8N8Y2 350 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 TSC1Q92574 1164 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 C18orf8Q96DM3 657 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 C16orf45Q96MC5 204 aaPredicted RBP10.58□□□□□ -0.72
NEDD8-202ENST00000396828 RPRD1AQ96P16 312 aaPredicted RBP10.58□□□□□ -0.72
NEDD8-202ENST00000396828 GDF3Q9NR23 364 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 PARVAQ9NVD7 372 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 CTTNBP2NLQ9P2B4 639 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 UVRAGQ9P2Y5 699 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 TRIM10Q9UDY6 481 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 PPM1HQ9ULR3 514 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 TFR2Q9UP52 801 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 SCINQ9Y6U3 715 aa10.58□□□□□ -0.72
NEDD8-202ENST00000396828 A0A0U1RQJ8 604 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 A0A1B0GVM2 712 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 TCAF2A6NFQ2 919 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 SMAD6O43541 496 aaKnown RBP10.57□□□□□ -0.72
NEDD8-202ENST00000396828 PLRG1O43660 514 aaKnown RBP10.57□□□□□ -0.72
NEDD8-202ENST00000396828 ATP9BO43861 1147 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 BNIP3LO60238 219 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 DFNA5O60443 496 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 SNAP91O60641 907 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 SDC3O75056 442 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 CYP1A2P05177 515 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 SRCP12931 536 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 RRM1P23921 792 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 CCR1P32246 355 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 GABRB2P47870 512 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 ACADVLP49748 655 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 GNG11P61952 73 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 TARDBPQ13148 414 aaKnown RBP eCLIP10.57□□□□□ -0.72
NEDD8-202ENST00000396828 SLC12A1Q13621 1099 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 TCEAL1Q15170 157 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 PTPN20Q4JDL3 420 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 ALFQ53S48 1182 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 OR6B2Q6IFH4 312 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 ZDHHC17Q8IUH5 632 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 ZNF683Q8IZ20 524 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 SH2D3CQ8N5H7 860 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 TRIM58Q8NG06 486 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 SLC35G2Q8TBE7 412 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 KLK6Q92876 244 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 RNF34Q969K3 372 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 PSMB7Q99436 277 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 NUP85Q9BW27 656 aa10.57□□□□□ -0.72
NEDD8-202ENST00000396828 SIK2Q9H0K1 926 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms